PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00024129-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 335aa MW: 36912.6 Da PI: 5.54

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00024129-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.4e-12	44	100	2	55
HHHHHHHHHHHHHHHHHH.......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.......feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++ f+ Lr+++P++ ++K +Ka+ L +++eYI+ Lq WALNUT_00024129-RA 44 RSKHSETEQRRRSKINERqdyfvnlFQILRDIIPQN----DQKRDKASFLLEVIEYIQFLQ 100 899***********866666666******9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-19	39	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.468	42	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-15	43	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.12E-14	44	103	No hit	No description
Pfam	PF00010	8.1E-10	44	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-7	48	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MVKSPKSDDH DHEEFEECDV VGTNGSCSRS GDGKSKDQKT TAHRSKHSET EQRRRSKINE 60 RQDYFVNLFQ ILRDIIPQND QKRDKASFLL EVIEYIQFLQ DKLNMYEGQY HGWSPEPKKL 120 IPWRNNCGPA ESIVDHSQVI ENGFGLENNV APPALLTNAQ NTLESELGTA AVYKALNHPT 180 GSATPAVPSN LQMKPNIFDP VVRGGVPAWS LHESISDAEN MPSQPQSQWW HARPYPTEDA 240 AQNNISEHEL AVDSGSVSIS SAYSQEILNS LTQELQSSGV DLSQANISVQ INAGKSANSA 300 LNAVASNSKV MAHTAVGSCH NDSGLAHKRL RTEES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846945.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Refseq	XP_018846946.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
TrEMBL	A0A2I4GSS3	0.0	A0A2I4GSS3_JUGRE; transcription factor BIM2-like isoform X1
STRING	XP_006482443.1	1e-126	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-54	BES1-interacting Myc-like protein 2