PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024103-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 250aa    MW: 27747.9 Da    PI: 7.5048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024103-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08152192954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  WALNUT_00024103-RA 152 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 192
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-14144203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6153192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-6166197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEQLKSEDQM EMMMRMMMMD MDKFPVFSEA YNGNVAELPP AESSGASSGN EICAMPQYID  60
HIDPKMPVSF TSTSPVLQES SAPPFSFSNS TTISGAGAAF SRQSQKKNSM AEMREMMFRI  120
AAMQPVHIDP ESVKPPKRRN VKISKDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS  180
MLDEAIHYVK FLKTQVQSLQ ERAAANPAPL SGIGLFPVAM CSGSYLPIME KAFQSSPPQS  240
VQLYEDIANC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018856470.10.0PREDICTED: transcription factor HEC2-like
TrEMBLA0A2I4HJX60.0A0A2I4HJX6_JUGRE; transcription factor HEC2-like
STRINGVIT_18s0001g10400.t011e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-43bHLH family protein