PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024070-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25869.1 Da PI: 8.4077 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.8 | 3.9e-29 | 34 | 136 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ Cvl+ ++ p +q ++ ++k+FG+s +l++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++ ++ WALNUT_00024070-RA 34 SCNGCRVLRKGCSETCVLRSCLqwiesPTAQGNAVLLLAKFFGRSDLLSFVSAVPESDRPALFQSLLYEACGRTVNPVDGAVGLLSRGMWH 124 6*************************999************************************************************** PP DUF260 87 leqlkaelallk 98 ++ql++e+al++ WALNUT_00024070-RA 125 VCQLAVETALAG 136 *******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.57 | 33 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-24 | 34 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVALVLVVIL SLSSLALLLP HDKAIRGRKK EKMSCNGCRV LRKGCSETCV LRSCLQWIES 60 PTAQGNAVLL LAKFFGRSDL LSFVSAVPES DRPALFQSLL YEACGRTVNP VDGAVGLLSR 120 GMWHVCQLAV ETALAGGTLT PITDITSAGI FPDASGNDES SVQSLFRPSV PCMQENQPSN 180 PLTLSLQPRF SSEIGSTVPR FPFPWRVKRS MDMMISFKSE MTSLASSGND RKLLNLFD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018851816.1 | 1e-174 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 5e-58 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2I4H6P2 | 1e-172 | A0A2I4H6P2_JUGRE; LOB domain-containing protein 38-like | ||||
STRING | cassava4.1_016184m | 2e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 6e-60 | LOB domain-containing protein 38 |