PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023800-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30507.4 Da PI: 9.939 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed ll+++v+++G g+W+++ar g++R +k+c++rw +yl WALNUT_00023800-RA 22 KGPWTSDEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ WALNUT_00023800-RA 75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.165 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.42E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-11 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 19.35 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 75 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.86E-10 | 79 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MNFGVMAGHL GWGLIGEEGW RKGPWTSDED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKAKVPSDA SEKAKTRLLR RQQFQQQQQQ QQLLQQQQQQ QQQLQLNQAD MKRILALLDE 180 NDHKATSVPQ ARQEMSTMYP NTTEEQSYFY SLLNSNVLVP EASNEDIIWD GLWMDDVHGN 240 FNTASATTRA SLQNLVTPFL NL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 22 | 124 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846808.1 | 0.0 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | A0A2I4GSD2 | 0.0 | A0A2I4GSD2_JUGRE; transcription factor MYB24-like | ||||
STRING | EOY06237 | 1e-133 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-83 | myb domain protein 305 |