PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023600-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 725aa MW: 79533.1 Da PI: 7.708 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7e-08 | 315 | 335 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg WALNUT_00023600-RA 315 PCPEFRK-GTCQKGDACEYAHG 335 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.21E-13 | 71 | 225 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.9E-15 | 75 | 226 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.681 | 117 | 226 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.0E-4 | 117 | 147 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.07E-12 | 117 | 226 | No hit | No description |
PROSITE profile | PS50088 | 8.79 | 117 | 141 | IPR002110 | Ankyrin repeat |
Pfam | PF13637 | 2.6E-7 | 119 | 169 | No hit | No description |
SMART | SM00248 | 3.3 | 152 | 184 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 3.3E-5 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.366 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-5 | 315 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 315 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 58 | 345 | 368 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.296 | 345 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MMNKVLVLMV PENLWGLSFW TKAVAILILG WVVWTGYLCL DMCSGSNSRL SSSSFGMEGE 60 FQKQNDGFFC DCSVLLELSA MDDLEAFRSE VEEKGLDVNE ASFWYGRRIG SKKMAFEKRT 120 PLMIAAMFGS VKVLKYMIET GKVDVNRVCG SDRVTALHCA VAGGTNTSVG IIKRLLDACA 180 DATCVNANGN KPVDLIGPAS RSPSNSNRKA IELLLKGDVS IGESDQITTE EEDRQKIATP 240 QLSKEGTEKK EYPIDVSLPD INNGIYGTDE FRMYTFKVKP CSRAYSHDWT ECPFVHPGEN 300 ARRRDPRKYP YSCVPCPEFR KGTCQKGDAC EYAHGVFESW LHPAQYRTRI CKDETGCARK 360 VCFFAHKAEE LRPVYASTGS AMPSPKSHSA GGLDMTVMSP LALSSSSMPM PATSTPPMSP 420 QAAASSPKSG SLWQNKLNLT PPALQLPGSR LKTALSARDL DLEMELLGLE SHASQQQQLI 480 DEITRLSSPS PSYWNKEFNR MGDLKPSNLD DIFGSLDSSM LSQLQGLSLK PTTPTQLQSP 540 NGLQMRQNMN QLRASYPTNL SSSSARKPSS FGFDSSAAVA AAVMNSRSAS FAKRSQSFVD 600 RGAAGTHRPG LTSAGNSASM MPSTRSDWSS PDGKLDWGIQ GDELNKLKKS ASFRFRDNNV 660 AKTTLMQSGV NEPDVCWVNS LVKDVSHERS GHFGTKKAQY NHGNGGEILP PWLEQLYIEQ 720 EQMVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842273.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A2I4GEE2 | 0.0 | A0A2I4GEE2_JUGRE; zinc finger CCCH domain-containing protein 29-like isoform X1 | ||||
STRING | XP_008233766.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |