PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023528-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 24323.1 Da PI: 4.8158 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l v ++G ++W++Iar g+ R++k+c++rw +yl WALNUT_00023528-RA 19 KGPWVEEEDERLTTFVSLMGERRWDSIARASGLQRSGKSCRLRWMNYL 66 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 14 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.826 | 14 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-14 | 19 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-19 | 20 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-10 | 21 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 69 | 93 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLQTTMAYQV AMQGGRLRKG PWVEEEDERL TTFVSLMGER RWDSIARASG LQRSGKSCRL 60 RWMNYLRPDL KHGQLSIDEE RIILQLHELW GNKLGNFHSK INNAEQDFFF HEQGGMTTVR 120 YQCGNKGSVD KDSWGTMNDI SSDALGFSDL QFTCSPYETR LSDWISGVSD DQSKIKHQED 180 CNTIESCCCY LAWISDNSNT WDYSGSLWDM D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-14 | 17 | 93 | 25 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814795.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814796.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814797.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814798.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814799.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814800.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814801.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814802.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814803.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814805.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814806.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814807.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Refseq | XP_018814808.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
TrEMBL | A0A2I4E5W9 | 1e-147 | A0A2I4E5W9_JUGRE; transcription factor MYB59-like | ||||
STRING | XP_008350343.1 | 2e-65 | (Malus domestica) | ||||
STRING | XP_008387530.1 | 2e-65 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 9e-44 | myb domain protein 27 |