PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023504-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 309aa MW: 35208.1 Da PI: 9.8252

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023504-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	56	109	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av++LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ WALNUT_00023504-RA 56 PRLRWTPDLHHCFVHAVQRLGGEDRATPKMVLQLMNVKGLTISHVKSHLQMYRS 109 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.745	52	112	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-32	52	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-16	54	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-25	56	110	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	57	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MNISSLKRSP SSSLDNEDCP SQPSHMRVSR PRMDDKLPER GLKSTAVRPY VRSKMPRLRW 60 TPDLHHCFVH AVQRLGGEDR ATPKMVLQLM NVKGLTISHV KSHLQMYRSM KHEQMIQEAA 120 MAAKKNDKAQ GILHSNYNFL CFKQRYFQQS EKFAAVLMMD NNSFQGRNST GTDHCNEDLT 180 PNNTSMPARW VGKQEIMRIG RKMTEPSPIS QEITSKAWEQ KPNSYIIFKD LLESCATRGT 240 NEQKRVPLQD TAAGCQSNDR TKETPAENIE RVDDYKMSLS MNSIGSRSLL KLHKSADHVN 300 DVSLELTLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-19	57	112	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	57	112	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	57	112	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	57	112	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-19	57	112	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY479962	4e-39	AY479962.1 Juglans nigra microsatellite wga321 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018849820.1	0.0	PREDICTED: uncharacterized protein LOC109012570
TrEMBL	A0A2I4H0Z6	0.0	A0A2I4H0Z6_JUGRE; uncharacterized protein LOC109012570
STRING	XP_002518461.1	2e-85	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-33	G2-like family protein