PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023391-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 178aa MW: 20223.2 Da PI: 10.1478 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.6e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l+d++ ++G g+W++I++ g+ R++k+c++r+ +yl WALNUT_00023391-RA 13 KGAWSREEDQKLIDYILKHGEGCWRSIPKAAGLPRCGKSCRLRYINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.3e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ WALNUT_00023391-RA 66 RGNFGEDEEDLIIRLHTLLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 89********************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.234 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-28 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.72E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.352 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.71E-10 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MRKPCCDKGE TNKGAWSREE DQKLIDYILK HGEGCWRSIP KAAGLPRCGK SCRLRYINYL 60 KPGLKRGNFG EDEEDLIIRL HTLLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLIQKGI 120 DPNKPHNYQL ARIEISSCSS TTAKSKFLSS KNQASKLPDL NLDLTLSTPS TRVEESKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018813001.1 | 1e-129 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-72 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2I4E0T0 | 1e-128 | A0A2I4E0T0_JUGRE; myb-related protein 308-like | ||||
STRING | XP_010044170.1 | 6e-82 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-71 | myb domain protein 4 |
Publications ? help Back to Top | |||
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