PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023343-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 1176aa MW: 129717 Da PI: 5.1764

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023343-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	437	460	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+++F k +L++H+ + H WALNUT_00023343-RA 437 FKCHKCTMTFDEKNDLVHHLVSsH 460 89*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00384	1.1	170	182	IPR017956	AT hook, DNA-binding motif
SMART	SM00384	1.2	210	222	IPR017956	AT hook, DNA-binding motif
PROSITE profile	PS50982	9.957	306	378	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	1.31E-7	314	361	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.890.10	3.2E-4	315	361	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	2.0E-5	315	358	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	0.053	437	460	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.847	437	465	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	439	460	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.51	484	506	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	484	511	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	486	506	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1176 aa Download sequence Send to blast
MASASVVENL RLEALRLVDL RLLSQPELYS LSLCSSSSSY TSFSNDNDDV LIPKIDRSVF 60 NESAGSRKQT YSRLRLAPRK PHSSSTSAPT RSSSSSFSIP RQIPEPLDEE NSQIISILKQ 120 LFAAETPSTA DADNLVSVHV EFEELLPDLS CAGLQNVPVQ VLSGDSGLEK RKRGRPRKDE 180 NRMIERKVAL ERKAEPNFPV DAAATEGENK RKRGRPRKNL NPKIESDQSE RNMALLRENV 240 EEKEDKMVMA SKKVDVTDVA GLGNVEDPYG EELKRRTEGL QTEAELLGFL SGLSGEWWKK 300 SRKKRIVLAG DFGHALPKGW RLMLSIKKRA SRVWLHCRRY ISPNGRQFVS CKEVSSYFLS 360 SSGLQDASQP ISDHTDDNYL VAREADHADD VDINLEDGKN ADDLISLPPP MTSILTDNEE 420 HDTIKMGEPR IQTGELFKCH KCTMTFDEKN DLVHHLVSSH SDTANRCKSS TSISDNLIII 480 GEKYECQFCH KIFGERHLYN GHIGIHMGNY EKSVEGSGII MQKSTDPTPT GVLPSTAMVH 540 ESREIDWAET FIIKSGFGCK AVKADIAIEA CSDRDDQALI EEHSEKPDKV FSINNDKLGK 600 VDVVTIVANR CNAGLENETV STKENKSVCV SSDKTNVFNC IPCGINNCVA DNKGSESWLL 660 ASPVNERTFV VENNVIKVSF PSVEEQKLEI GSESGLNHKN KTCSGEDIEF KCFASTVEDM 720 KVDDGYKSEN SELVSSFGNH DVGLEDVCAT VDISGNTIIT VGFGSNHASQ NDKAVTSTKQ 780 EGSSGSCLVT SSWNHQYIVE NNANKSSCCT VEAEAPFQGK SFHHHEFAPS LNEHGSHFNN 840 RMTEVPTGAV EELKPDEVRN CKIGELKFAF DCNETEVDVD TTACSGQERC FKGSLLVSSA 900 DEHRCVFKNN ICSSTMEELK QDMGLSESGL HSQFGYEQNH DKINNVNKVS CSSIEEAEHK 960 KVKSSWNTKA FLAFGTRAGT DTDVRSTMWG QSSEGSSLVL SGDKQTFSSD NKVTSVCSST 1020 VGEHERCSEN LRDGGSMIDL GNQSQSNEDI MAELLWRTAE QNVGQNGLAN ISSPLVQSSG 1080 CFPNLMSSKA SSHPEEARVL SYDAEMDQGF NSSYWLKKEA LPSLPKIVNG HPVRTMCVWC 1140 AEEFYLESVN SRMQSGSVGF MCAACNAKFS GQFNVL

Sequence ? help Back to Top

Protein Sequence Length: 1176 aa Download sequence Send to blast

MASASVVENL RLEALRLVDL RLLSQPELYS LSLCSSSSSY TSFSNDNDDV LIPKIDRSVF  60
NESAGSRKQT YSRLRLAPRK PHSSSTSAPT RSSSSSFSIP RQIPEPLDEE NSQIISILKQ  120
LFAAETPSTA DADNLVSVHV EFEELLPDLS CAGLQNVPVQ VLSGDSGLEK RKRGRPRKDE  180
NRMIERKVAL ERKAEPNFPV DAAATEGENK RKRGRPRKNL NPKIESDQSE RNMALLRENV  240
EEKEDKMVMA SKKVDVTDVA GLGNVEDPYG EELKRRTEGL QTEAELLGFL SGLSGEWWKK  300
SRKKRIVLAG DFGHALPKGW RLMLSIKKRA SRVWLHCRRY ISPNGRQFVS CKEVSSYFLS  360
SSGLQDASQP ISDHTDDNYL VAREADHADD VDINLEDGKN ADDLISLPPP MTSILTDNEE  420
HDTIKMGEPR IQTGELFKCH KCTMTFDEKN DLVHHLVSSH SDTANRCKSS TSISDNLIII  480
GEKYECQFCH KIFGERHLYN GHIGIHMGNY EKSVEGSGII MQKSTDPTPT GVLPSTAMVH  540
ESREIDWAET FIIKSGFGCK AVKADIAIEA CSDRDDQALI EEHSEKPDKV FSINNDKLGK  600
VDVVTIVANR CNAGLENETV STKENKSVCV SSDKTNVFNC IPCGINNCVA DNKGSESWLL  660
ASPVNERTFV VENNVIKVSF PSVEEQKLEI GSESGLNHKN KTCSGEDIEF KCFASTVEDM  720
KVDDGYKSEN SELVSSFGNH DVGLEDVCAT VDISGNTIIT VGFGSNHASQ NDKAVTSTKQ  780
EGSSGSCLVT SSWNHQYIVE NNANKSSCCT VEAEAPFQGK SFHHHEFAPS LNEHGSHFNN  840
RMTEVPTGAV EELKPDEVRN CKIGELKFAF DCNETEVDVD TTACSGQERC FKGSLLVSSA  900
DEHRCVFKNN ICSSTMEELK QDMGLSESGL HSQFGYEQNH DKINNVNKVS CSSIEEAEHK  960
KVKSSWNTKA FLAFGTRAGT DTDVRSTMWG QSSEGSSLVL SGDKQTFSSD NKVTSVCSST  1020
VGEHERCSEN LRDGGSMIDL GNQSQSNEDI MAELLWRTAE QNVGQNGLAN ISSPLVQSSG  1080
CFPNLMSSKA SSHPEEARVL SYDAEMDQGF NSSYWLKKEA LPSLPKIVNG HPVRTMCVWC  1140
AEEFYLESVN SRMQSGSVGF MCAACNAKFS GQFNVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812426.1	0.0	PREDICTED: uncharacterized protein LOC108984817 isoform X1
Refseq	XP_018812427.1	0.0	PREDICTED: uncharacterized protein LOC108984817 isoform X1
TrEMBL	A0A2I4DZ65	0.0	A0A2I4DZ65_JUGRE; uncharacterized protein LOC108984817 isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5810	17	19