PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023299-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 366aa    MW: 40791.7 Da    PI: 6.358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023299-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12194240455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  WALNUT_00023299-RA 194 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKELQ 240
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.529190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-12195243No hitNo description
SMARTSM003536.9E-14196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELSSGKWLS ELEMDDYEYI HQCHMNSTLD DGFPTNDIAT AIQENFQQSF SSESYSSYPA  60
FSTKNTITTT TTTLSNSSIE TSRNVSFERP AKQTKIDSTW NVSGITQNES PKPSSSPHIL  120
SFGNPNSLPD NPKQFCRNLD SSLKPKHEVV TPVNMHVPMI SRGSIENQNH APKASQGNKR  180
AGSVTRSTHS NAQDHIMAER KRREKLSQRF IALSAIVPGL KKMDKASVLG DAIKYVKELQ  240
ERVNLLEEQT KKRTVESFVS VKKSQLSTDD DTSSCDENFE GRSDEALPEI EARISDKDVL  300
IRIHCEKNRG VVVKILGEIE NLHLSVVNSS VVPFGNSTLD ITVIAQMDNE FDLTAKDLVK  360
TLRVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13194249863Transcription factor MYC2
5gnj_B3e-13194249863Transcription factor MYC2
5gnj_E3e-13194249863Transcription factor MYC2
5gnj_F3e-13194249863Transcription factor MYC2
5gnj_G3e-13194249863Transcription factor MYC2
5gnj_I3e-13194249863Transcription factor MYC2
5gnj_M3e-13194249863Transcription factor MYC2
5gnj_N3e-13194249863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813188.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2I4E1B70.0A0A2I4E1B7_JUGRE; transcription factor bHLH18-like
STRINGEOX918221e-139(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-68bHLH family protein