PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023269-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 30085.9 Da PI: 8.9285 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +g+WvAeI+d + r +lg+f +ae+Aa+a+++a+ l+g WALNUT_00023269-RA 33 SKFVGVRQRP-SGKWVAEIKDtT-----HkIRMWLGTFESAEQAARAYDEAAFLLRG 83 79********.7*********33.....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-12 | 33 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-19 | 33 | 92 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.95E-31 | 33 | 93 | No hit | No description |
SMART | SM00380 | 1.1E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.073 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-27 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MEHLLRKQQK GVSANMQSKY KERTTNNNFI SKSKFVGVRQ RPSGKWVAEI KDTTHKIRMW 60 LGTFESAEQA ARAYDEAAFL LRGSNTRTNF ATHISPDSPI SLKIKNLLHQ KKTSKQHPSA 120 VPTVKPASTR ITPTCCLTNF STKQSASSSG KDQGPLMVGD VYRPELSNCV AGVEAGKFHS 180 DHSWTSQSPT GSDQLPLLQD RLEFPKHGVN NLMPADTTYV ELTEFERMKV ERQISASLYE 240 MNGVNDYAYD DASDPLWDLS ALCHLFCPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 33 | 90 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018809427.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A2I4DQK2 | 1e-139 | A0A2I4DQK2_JUGRE; ethylene-responsive transcription factor RAP2-11-like | ||||
STRING | XP_002532067.1 | 6e-87 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-49 | related to AP2 11 |