PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023232-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 400aa MW: 45729.9 Da PI: 8.9734 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.4 | 2.5e-13 | 3 | 77 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++p +fa+++ + s tl ++g +W+v l ++ ++++++ +GW++Fv+ +++g f++F+++g+s+f +v+++ WALNUT_00023232-RA 3 RIPENFANKFRDE--FSAFATLSIPDGHVWQVGL--KRIGNSVWFHNGWQKFVERYSIRVGYFLIFRYEGNSRF--FVHIY 77 699****999644..777899999**********..9*********************************9999..88886 PP | |||||||
2 | B3 | 55.5 | 1e-17 | 286 | 373 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W v++ k+gr l++GW eF +n+L egD++vF++ ++++ l+ WALNUT_00023232-RA 286 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQVSDGRQWPVRC--LYKGGRAKLSQGWYEFSLENNLGEGDVCVFEMLRTRDIVLK 371 78899******************866743...59**************..66666778***********************8877666566 PP EE CS B3 94 vk 95 v+ WALNUT_00023232-RA 372 VT 373 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.719 | 1 | 80 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-5 | 1 | 80 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-17 | 2 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.70E-15 | 3 | 78 | No hit | No description |
Pfam | PF02362 | 6.3E-11 | 3 | 77 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-19 | 3 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-23 | 275 | 376 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-23 | 276 | 376 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.12E-22 | 281 | 376 | No hit | No description |
SMART | SM01019 | 1.6E-16 | 283 | 378 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 283 | 376 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-16 | 286 | 372 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MQRIPENFAN KFRDEFSAFA TLSIPDGHVW QVGLKRIGNS VWFHNGWQKF VERYSIRVGY 60 FLIFRYEGNS RFFVHIYNLA ASEISYQSNA LGGTHGLIYG NQYNVFEEME DDDSAAIMGS 120 SLPCLTSGPL KNKLLGECGD QLTPSRSYTP PSLQNLFNGS QLKNCLNWAG ERNLHPSKGF 180 RKSPAETEPT RNVGVQFNAI EFKKSLDEVK FQSPDQETQI KKTMRKKRKP DPNEQESSAQ 240 HEEVEMRFRF YESASARKRT VTAEERERAI NAAKAFEPAN PFCRVVLRPS YLYRGCIMYL 300 PSCFAEKNLS GVSGFIKLQV SDGRQWPVRC LYKGGRAKLS QGWYEFSLEN NLGEGDVCVF 360 EMLRTRDIVL KVTPFRVLDD TGLVVNHQLQ QNVGQTKFII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-74 | 249 | 377 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-74 | 249 | 377 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018807979.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
Swissprot | Q8L3W1 | 1e-124 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2I4DLF2 | 0.0 | A0A2I4DLF2_JUGRE; B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
STRING | XP_010096266.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-126 | B3 family protein |
Publications ? help Back to Top | |||
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