PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023169-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 164aa    MW: 18306.5 Da    PI: 7.575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023169-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-171464155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+g
  WALNUT_00023169-RA 14 KKYKGVRQRK-WGKWVSEIRVP---G-SqERLWLGSYATPEAAAVARDVAFYCLRG 64
                        59*******9.**********8...4.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-241474No hitNo description
SMARTSM003805.8E-281580IPR001471AP2/ERF domain
PfamPF008479.1E-91564IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-181575IPR016177DNA-binding domain
PROSITE profilePS5103221.3511574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-261574IPR001471AP2/ERF domain
PRINTSPR003671.8E-81627IPR001471AP2/ERF domain
PRINTSPR003671.8E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MLNSEESGDS SSQKKYKGVR QRKWGKWVSE IRVPGSQERL WLGSYATPEA AAVARDVAFY  60
CLRGPSALDY LNFPLMLPHG VRNGMSPRSV QKAASDAGMA IDAQLIAHKL PDKELTREEK  120
SGVAPGQETD CTWESVGDNS RGTWEGSHDQ WKEERFHNSL IISR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849485.11e-108PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I81e-41ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2I4H0061e-107A0A2I4H006_JUGRE; ethylene-responsive transcription factor ERF020
STRINGPOPTR_0013s10420.13e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-44ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]