PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023094-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 147aa    MW: 16709.4 Da    PI: 4.98
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023094-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24e-1538117893
                         -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         s+v  + ++ lp k  + +  +     +  t+ + +g+ We+ +  +++    +l +GWk Fv++n+Lk+gD +vF+l+++ +++  
  WALNUT_00023094-RA  38 SHVRPRYQMALPVKLNRIIpPL-----VIPTVLTYRGKNWEMLY--KGTHTVKWLDSGWKAFVDDNDLKAGDACVFELMESCRTKII 117
                         5555555666666654322322.....234677899********..9999999************************9986555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-1726118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1627124IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-1729124No hitNo description
SMARTSM010193.0E-935126IPR003340B3 DNA binding domain
PfamPF023622.7E-1335117IPR003340B3 DNA binding domain
PROSITE profilePS5086311.95663126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEDPPEQPET NPMTTTLQGD EYLPLSGNPY CDIILAKSHV RPRYQMALPV KLNRIIPPLV  60
IPTVLTYRGK NWEMLYKGTH TVKWLDSGWK AFVDDNDLKA GDACVFELME SCRTKIILRV  120
HILRGDIPSE FLDKVEGESL ATPIVIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858247.12e-99PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018858248.12e-99PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018858249.12e-99PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018858251.12e-99PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2I4HQ175e-98A0A2I4HQ17_JUGRE; B3 domain-containing protein Os04g0386900-like
STRINGXP_004307182.15e-50(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-10B3 family protein