PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023086-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 728aa MW: 79625.9 Da PI: 7.1094 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.7e-08 | 305 | 325 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg WALNUT_00023086-RA 305 PCPEFRK-GTCRRGDLCEYAHG 325 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50297 | 17.237 | 84 | 159 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 5.6E-10 | 84 | 153 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.68E-8 | 84 | 159 | No hit | No description |
PROSITE profile | PS50088 | 8.523 | 84 | 105 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0052 | 84 | 114 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 5.6E-17 | 84 | 164 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.13E-15 | 84 | 163 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0065 | 119 | 151 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.194 | 119 | 154 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.2E-5 | 300 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-6 | 305 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.896 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MCAGPEHLNL QLAPPPSSES RSLTKAMNNP IGTVKSELSF SILLELAADN DVEGFKKSIC 60 NDSVITETGL WYGRQEFLKS MVLEHRTPLM VAAKYGSVDV VKLILALPEA DVNLSSRADK 120 STALHCAASG GSVGAVVVVK LLLCAGAEPN VTDAYGRRPC DVIVAPPKLS NLKFALEELL 180 RNDYPACQED PHVSTVDLRS DSTPLPASPE KGSIFVSNSI LSPVNCKPNG ANVGSLPEKK 240 EYPIDPSLPD LKSSIYATDE FRMFSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPKKYH 300 YSCVPCPEFR KGTCRRGDLC EYAHGVFECW LHPAQYRTRL CKDGMSCMRR VCFFAHKHEE 360 LRLLYASSGS ALPSPRSATS AATVMDMAAA LNMFPSSPSV GSAMSLSPFS PSLSPSGNGV 420 SQMSMAWPQQ NIPTLHLPGS NLQMSRLRSS LNARDISAEL RFSQDFEMQH QPFLNDFSRS 480 SQAHISISPR NLSFHSKTLS PSNLDELFSA EVSSPRYSDQ HAASAVFSPS HKSALNQFQQ 540 QQNSMLSPIK TNVLPAQNID HPHLQASFGV SSPGMISPWS IDPLSPMGSR VSAFSHLEKH 600 QLQLRSFSSR DLGSNLPCDL GSNSLVGSPR HSWSKWESHN GKVDWSVQGD ELAGLRKSCS 660 IGRNREKPDV SWVQSLVKEL PSENTENALV SGTALSVEGS DSKHQTESSD QTVSGPWLEQ 720 LQIDQIAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018813225.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_018813226.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A2I4E1F5 | 0.0 | A0A2I4E1F5_JUGRE; zinc finger CCCH domain-containing protein 56-like | ||||
STRING | VIT_06s0004g02160.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |