PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023008-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 456aa MW: 50560.9 Da PI: 7.2962 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 144 | 189 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ WALNUT_00023008-RA 144 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 189 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 196 | 239 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ WALNUT_00023008-RA 196 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 239 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.201 | 139 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-14 | 143 | 192 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-16 | 144 | 189 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.11E-28 | 144 | 237 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 145 | 197 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.53E-13 | 147 | 188 | No hit | No description |
PROSITE profile | PS51294 | 26.929 | 191 | 245 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 195 | 243 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 196 | 238 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 198 | 244 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-11 | 198 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MTNENAMYAP VNQSNLSCYS LSSPSSMSSS LGMVAEMGSL SLTRHYGVAS AVSSSQESNL 60 SKNSELENRR TCWGFPFRGN SIARSFEEHN NSNAGESKDS DSRDGFGKNN EIMDQNVDLN 120 DKNSNENVMS GKETDTGQSK LCARGHWRPA EDTKLKELVA LYGPQNWNLI AEKLEGRSGK 180 SCRLRWFNQL DPRINRRAFS EEEEERLMQA HRIYGNKWAM IARLFPGRTD NAVKNHWHVI 240 MARKYREQSS AYRRRKLGQS VYRRMEENPS FVCGDAATRT EALPYCLNFP GGGLSNVTPF 300 PFGTFDGASN GVDFGLNGSP SMTSGEAISS SMLPYSGFCA QQTSFDFFPG VCPFPLNLFR 360 SPKNNDTRGS LSQGRSWDRP SDGAHVSGFY PHHPPFFMAM QQSNNHNPYS FLEPSTPAPQ 420 VSASDPSSSS ATESRVANHF ETIPPPFIDF LGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-34 | 144 | 244 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846121.1 | 0.0 | PREDICTED: myb-related protein Hv33-like | ||||
TrEMBL | A0A2I4GQD9 | 0.0 | A0A2I4GQD9_JUGRE; myb-related protein Hv33-like | ||||
STRING | VIT_01s0026g02600.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-78 | myb domain protein 105 |