PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023008-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 456aa    MW: 50560.9 Da    PI: 7.2962
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023008-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16144189147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  WALNUT_00023008-RA 144 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 189
                         899*****************************.***********996 PP

2Myb_DNA-binding55.41.4e-17196239146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  WALNUT_00023008-RA 196 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 239
                         678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201139190IPR017930Myb domain
SMARTSM007173.3E-14143192IPR001005SANT/Myb domain
PfamPF002498.0E-16144189IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-28144237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-25145197IPR009057Homeodomain-like
CDDcd001674.53E-13147188No hitNo description
PROSITE profilePS5129426.929191245IPR017930Myb domain
SMARTSM007171.8E-14195243IPR001005SANT/Myb domain
PfamPF002492.7E-14196238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-20198244IPR009057Homeodomain-like
CDDcd001671.10E-11198238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MTNENAMYAP VNQSNLSCYS LSSPSSMSSS LGMVAEMGSL SLTRHYGVAS AVSSSQESNL  60
SKNSELENRR TCWGFPFRGN SIARSFEEHN NSNAGESKDS DSRDGFGKNN EIMDQNVDLN  120
DKNSNENVMS GKETDTGQSK LCARGHWRPA EDTKLKELVA LYGPQNWNLI AEKLEGRSGK  180
SCRLRWFNQL DPRINRRAFS EEEEERLMQA HRIYGNKWAM IARLFPGRTD NAVKNHWHVI  240
MARKYREQSS AYRRRKLGQS VYRRMEENPS FVCGDAATRT EALPYCLNFP GGGLSNVTPF  300
PFGTFDGASN GVDFGLNGSP SMTSGEAISS SMLPYSGFCA QQTSFDFFPG VCPFPLNLFR  360
SPKNNDTRGS LSQGRSWDRP SDGAHVSGFY PHHPPFFMAM QQSNNHNPYS FLEPSTPAPQ  420
VSASDPSSSS ATESRVANHF ETIPPPFIDF LGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-341442447107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846121.10.0PREDICTED: myb-related protein Hv33-like
TrEMBLA0A2I4GQD90.0A0A2I4GQD9_JUGRE; myb-related protein Hv33-like
STRINGVIT_01s0026g02600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-78myb domain protein 105