PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023007-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 356aa MW: 40600.9 Da PI: 6.8385

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023007-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.8	2.1e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk WALNUT_00023007-RA 9 KRLENTNGRQATYAKRKNGIMKKANELSILCDIDIVLLMFSPTGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.221	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.06E-24	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00120	8.23E-25	2	54	No hit	No description
PRINTS	PR00404	2.4E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.2E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KANELSILCD IDIVLLMFSP TGKPSLCRGV 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS TQTVEDLTNQ 120 ASTLEARISE IHKRLSYWTN PDKIDSVEHL GQMENSLRES LNQIQTHKEN LQKQQLMSLE 180 CSSQFQHEMH MPFSLGSDQQ LQPLPWIPND DNHHLFLPED PNLLPHRDAE CSTASSLGSY 240 SGYFCTNKNS EIHNSGQENG MLNEFSRIAP MRLQLGAQYP YLPYNLNLMN DTKFQPATQM 300 NPQELPVDYH VNGSFETPRP GYETTQHCWA STSGSGPISM FDEHLYNQVS IKLTFL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KANELSILCD IDIVLLMFSP TGKPSLCRGV  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS TQTVEDLTNQ  120
ASTLEARISE IHKRLSYWTN PDKIDSVEHL GQMENSLRES LNQIQTHKEN LQKQQLMSLE  180
CSSQFQHEMH MPFSLGSDQQ LQPLPWIPND DNHHLFLPED PNLLPHRDAE CSTASSLGSY  240
SGYFCTNKNS EIHNSGQENG MLNEFSRIAP MRLQLGAQYP YLPYNLNLMN DTKFQPATQM  300
NPQELPVDYH VNGSFETPRP GYETTQHCWA STSGSGPISM FDEHLYNQVS IKLTFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-13	1	92	1	90	MEF2C
5f28_B	6e-13	1	92	1	90	MEF2C
5f28_C	6e-13	1	92	1	90	MEF2C
5f28_D	6e-13	1	92	1	90	MEF2C
6byy_A	5e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	5e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	5e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	5e-13	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846117.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	1e-116	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2I4GQF4	0.0	A0A2I4GQF4_JUGRE; agamous-like MADS-box protein AGL30 isoform X2
STRING	POPTR_0008s08780.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-118	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]