PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022983-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 430aa    MW: 47879.1 Da    PI: 7.0276
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022983-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.2e-32251305155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  WALNUT_00022983-RA 251 KARIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMNSDGLTIFHVKSHLQKYRI 305
                         68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.47248308IPR017930Myb domain
SuperFamilySSF466894.66E-17249305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-29249306IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23251306IPR006447Myb domain, plants
PfamPF002493.3E-9255304IPR001005SANT/Myb domain
PfamPF143792.3E-20343389IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MNTQKIDCRE PVSQNYELIN DRGSEFANCS SQLFGSKQSW QFRTGAQPPT MGGGSQQQYI  60
RPARSSSTIM SRFDSPASAF YATERCMGIQ QYDSPVDDPS VFSQVSRTYD SQFPSYQSSG  120
EDFSIDSAHQ DDSNFDLRNT LQAMVKSQFS CNQYYGSSEN KFSGSNSPGC ELLPHEQNKL  180
LGDDTNYGGR HLLIPFKGNQ DDMGNCNSHT SSPPRLGCSS QQEKQFSRLS SENIPITPGH  240
SASAGAVISS KARIRWTQDL HEKFVECVNR LGGAEKATPK AILKLMNSDG LTIFHVKSHL  300
QKYRIAKYIP DSTEGNACNN SGKLEKRNSM SNVPQLDVKT GLQIKEALQV QLDVQRRLHE  360
QLEVQRKLQL QIEEQGKQLK MMFDQQQKTN SSLFPNHNLD TSSAEPSNSQ EVQVPISEGS  420
GNPLFPSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-24251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-24251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-24251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-24251308158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-24251308259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843616.10.0PREDICTED: myb family transcription factor PHL5-like isoform X4
TrEMBLA0A2I4GIA50.0A0A2I4GIA5_JUGRE; myb family transcription factor PHL5-like isoform X4
STRINGEOY094691e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.18e-71G2-like family protein