PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00022884-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 702aa MW: 78485.8 Da PI: 5.6592

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022884-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.4e-14	467	513	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ WALNUT_00022884-RA 467 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 513 7999********************8.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.5E-51	9	186	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.676	463	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-18	465	530	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-19	467	528	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.95E-15	467	517	No hit	No description
Pfam	PF00010	8.8E-12	467	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-17	469	518	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MAAPPSSQLQ SMLQAAVQSV QWTYSLFWQF CPQQGILVWA DGYYNGAIKT RKTVQPMEVS 60 TEEASLQRSQ QLRELYDSLS AAETNQPARR PCAALSPEDL TESEWFYLMC VSFSFSPGVG 120 LPGKAYAKRQ HVWLTGANDV DSKTFSRAIL AKTVLCIPLL DGVVEFGTTE KVQEDLGLIE 180 QVKSFFTGHP HQPHPPKPAL SEHSTSNPET SSDHPRFHSP PVPVLYPVAD VPVNTNNPEE 240 DEEEEEEEEE DVESDSEIET GRNNPHITPA TNPQGIAAAA EPSELMQLEM SEDIRLGSPD 300 DGSNNLDSDF HMLGVGQSGN PTNQQRQTDS YRAESTRRWP LSQQDPLLGS GIQQPPSDLA 360 QEDTHYSQTV STIVQSQTSR RAKSASTDYI SYSSQSAFTK WTTTTVDHHL RLPIDQSTSQ 420 WLLKYVLLSI PFLHTKYRDE NSPKLRDSDA TTTRFKKGTP QDELSANHVL AERRRREKLN 480 ERFIILRSLV PFVTKMDKAS ILGDTIEYLK QLRKKIHDLE AHNRQMEVDQ RSRSLGDLQR 540 STSLGDLQRS SSSLKEQRSG VTVVDRARVG MDNRVQVVQP GPEKRKLRIV EGSNGSAKAK 600 TVDSSPPPPP SPTSMETTVQ VSIIESEGLL ELQCPYKEGL LLDIMQMLRE LRIETTTVQS 660 SLTNGFFVAE LRAKVKENVS GKKRSIVEVK RAINKIIPHN DS

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MAAPPSSQLQ SMLQAAVQSV QWTYSLFWQF CPQQGILVWA DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS AAETNQPARR PCAALSPEDL TESEWFYLMC VSFSFSPGVG  120
LPGKAYAKRQ HVWLTGANDV DSKTFSRAIL AKTVLCIPLL DGVVEFGTTE KVQEDLGLIE  180
QVKSFFTGHP HQPHPPKPAL SEHSTSNPET SSDHPRFHSP PVPVLYPVAD VPVNTNNPEE  240
DEEEEEEEEE DVESDSEIET GRNNPHITPA TNPQGIAAAA EPSELMQLEM SEDIRLGSPD  300
DGSNNLDSDF HMLGVGQSGN PTNQQRQTDS YRAESTRRWP LSQQDPLLGS GIQQPPSDLA  360
QEDTHYSQTV STIVQSQTSR RAKSASTDYI SYSSQSAFTK WTTTTVDHHL RLPIDQSTSQ  420
WLLKYVLLSI PFLHTKYRDE NSPKLRDSDA TTTRFKKGTP QDELSANHVL AERRRREKLN  480
ERFIILRSLV PFVTKMDKAS ILGDTIEYLK QLRKKIHDLE AHNRQMEVDQ RSRSLGDLQR  540
STSLGDLQRS SSSLKEQRSG VTVVDRARVG MDNRVQVVQP GPEKRKLRIV EGSNGSAKAK  600
TVDSSPPPPP SPTSMETTVQ VSIIESEGLL ELQCPYKEGL LLDIMQMLRE LRIETTTVQS  660
SLTNGFFVAE LRAKVKENVS GKKRSIVEVK RAINKIIPHN DS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	5e-20	9	186	9	192	Transcription factor MYC3
4rqw_B	5e-20	9	186	9	192	Transcription factor MYC3
4rs9_A	5e-20	9	186	9	192	Transcription factor MYC3
4yz6_A	5e-20	9	186	9	192	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	476	ERRRRE
2	472	477	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812928.1	0.0	PREDICTED: basic helix-loop-helix protein A-like isoform X1
Refseq	XP_018812929.1	0.0	PREDICTED: basic helix-loop-helix protein A-like isoform X2
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	A0A2I4E0J9	0.0	A0A2I4E0J9_JUGRE; basic helix-loop-helix protein A-like isoform X1
STRING	EOX94796	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3637	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-97	bHLH family protein

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001]