PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022878-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 355aa    MW: 40641 Da    PI: 5.1835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022878-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +l+ +v+++G  +W+  +r  g+ R++k+c++rw +yl
  WALNUT_00022878-RA 14 KGTWTPEEDTKLISYVTRYGCWNWRQLPRFAGLSRCGKSCRLRWMNYL 61
                        799*****************99************************97 PP
2Myb_DNA-binding574.3e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ ++eE+e+++++++ lG++ W+tIa+ ++ gRt++++k++w++ 
  WALNUT_00022878-RA  67 RGNYSKEEEEKIINLHESLGNR-WSTIAAQLP-GRTDNEIKNHWHTN 111
                         899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.274961IPR017930Myb domain
SuperFamilySSF466892.48E-2911108IPR009057Homeodomain-like
SMARTSM007177.7E-111363IPR001005SANT/Myb domain
PfamPF002497.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-231568IPR009057Homeodomain-like
CDDcd001671.27E-81661No hitNo description
PROSITE profilePS5129426.19462116IPR017930Myb domain
SMARTSM007178.5E-1766114IPR001005SANT/Myb domain
PfamPF002498.3E-1667111IPR001005SANT/Myb domain
CDDcd001678.24E-1269112No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2669117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVRTPRCDKN GLKKGTWTPE EDTKLISYVT RYGCWNWRQL PRFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY SKEEEEKIIN LHESLGNRWS TIAAQLPGRT DNEIKNHWHT NLKKRLKQNS  120
VTHEEKQDSN DLPRGEKRQK RKEPSHSLKN PETTHEAIDT AVLDRRTNVV AGDINHGTST  180
EYVETDGNFW TQPFLTDDSN ITSGFPSPFM DSEYLCSVLD EFLSCPYGLF EEEDEYSNNL  240
TPSEKRQKRL NDQPNKPLLH PSTQIIDSSP SSPQPCSSEL SSITKDTAVT TSTNMVADDN  300
VVTSFEASTE NGSNFWTEPF FADNSYIPSD FSAPFICTDE YLSPAFDEFL CSYVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018809383.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9SJX82e-58MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2I4DQG30.0A0A2I4DQG3_JUGRE; protein ODORANT1-like
STRINGPOPTR_0013s14560.19e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-61myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]