PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00022770-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 655aa MW: 70985.2 Da PI: 7.4084 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.9e-08 | 337 | 381 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I r Rt+ q+ rw WALNUT_00022770-RA 337 RKPWSEAEDMELIAAVQKCGEGNWANILRGDFkGDRTATQLSQRW 381 789************************984223588888888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 332 | 384 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.778 | 332 | 389 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-12 | 333 | 387 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-9 | 336 | 387 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-6 | 337 | 381 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.70E-14 | 338 | 386 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MVEKTKKLMK GSLSEEDIST LLQRYTATTV LALLQEVAHC PDVKIDWNAL VKNTSTGISD 60 AREYQILWRH LAFRYTATTV LALLQEVAHC PDVKIDWNAL VKNTSTGISD AREYQILWRH 120 LAYRHALLDQ YFDMWCFHGY TATTVLALLQ EVAHCPDVKI DWNALVKNTS TGISDAREYQ 180 ILWRHLAYRH ALLDQYFDMW CFHGVHLLQK SCPQNSALVP HDDDDSDLEY EVEAFPTVSS 240 DTSTEAAASV KVLIASGLPS ECSLPASSIV EAPLTINIPN GWSSRGPSQN SEATCSMQGT 300 NITIPVSLQK MPLPAATPVE GLDANGSASS MPPRRKRKPW SEAEDMELIA AVQKCGEGNW 360 ANILRGDFKG DRTATQLSQR WAIIRKRRDN LNVGPNSTRS QLSEEWRAAH HAMSLALDMP 420 IRNLPVARPA GMNTTRNSVL PPPALPSSVL QVQDQPYECS NATKSSAIGS LGSISKSQSS 480 IKPKTKPTLG SDSALRATAV AAGARIASPS DAASFIKATQ AKSAVHLKPT DGSSTKLSMP 540 GGVSTQSDTQ TNVRYICPGL EAKPCSSYNA GNVTNTAVHT GSVKAVLPTV QHASSSFAIP 600 SNLSSSEQAN AVSSTLPSEV LPKQEVMTAE EIKVSKSGYA LKEVVQDGAR ASQHA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 332 | 338 | PRRKRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018837791.1 | 0.0 | PREDICTED: uncharacterized protein LOC109003908 | ||||
TrEMBL | A0A2I4G1L8 | 0.0 | A0A2I4G1L8_JUGRE; uncharacterized protein LOC109003908 | ||||
STRING | XP_010086659.1 | 1e-163 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-74 | MYB_related family protein |