PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00022647-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21895.8 Da PI: 8.1674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.8 | 9.8e-40 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeAe r+rdPvyG+vg+i++lqqq+ +l WALNUT_00022647-RA 9 PCGACKFLRRKCINGCVFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEAESRIRDPVYGCVGHIFTLQQQVVNL 99 7***********************9989*************************************************************** PP DUF260 91 kaelallkee 100 +aela ++++ WALNUT_00022647-RA 100 QAELAFVQAR 109 *****99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.102 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MSASNGGGPC GACKFLRRKC INGCVFAPYF DSDQGTAHFA AVHKVFGASN ASKLLLRIPA 60 HKRLDAVVTL CYEAESRIRD PVYGCVGHIF TLQQQVVNLQ AELAFVQARL ATLHRLPPPH 120 SQSPSPTNHH SSSDLGSTSD LQSNSNSAMH FDPLHPHPIP TELTSFLNSL DGDLEAGTVQ 180 VLAREIISRY LPGVRFRPSS PN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018806966.1 | 1e-148 | PREDICTED: LOB domain-containing protein 31-like | ||||
Swissprot | O81322 | 2e-74 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2I4DIJ3 | 1e-147 | A0A2I4DIJ3_JUGRE; LOB domain-containing protein 31-like | ||||
STRING | EOX96194 | 1e-102 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00210.1 | 9e-77 | LOB domain-containing protein 31 |