PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00022626-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 485aa MW: 52611.2 Da PI: 8.3288

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022626-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	5.9e-40	135	195	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss WALNUT_00022626-RA 135 PDQILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 195 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	132	192	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	136	193	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	139	193	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	141	177	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MLESKDPAIK LFGKTIPLQL RHQTWANGPC GSGDCSDQNL LSSTTSSCLE NSGRESARHD 60 GDKVSLGREL TEDKPEDCTS HQITEDSKDP TSSSGIGENP KTPSVDRETS SLKNASKNGE 120 QSETSISQEK TLKKPDQILP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR 180 NVPVGAGRRK NKNSSSSHYR HIIVSEALQR DRVNGLRYSK NGTVLTFGSD SPLCESMASV 240 LNLAGKTTYH VQNGFHTPGQ RTLVSGGDNG DDHSSGSSIT ASNSTEKEGI ALQESAVKNH 300 PGVPPHLPCF PGTPWPLQWN SAQWGSVMPP PSLSPSGFPV SFYPAPAYWG CTVPGSWNVQ 360 CLPPPSSFLS HTGQSSAMNT STLGKHSRDG NILNPANLES IKDQSSERCW IPKTSRINVS 420 DEAVKSSITP TLGTKHEKTN SVNGGGLFKA FQSKSNDKSH LIETSRVLQS NPAALSRSLN 480 FHEST

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MLESKDPAIK LFGKTIPLQL RHQTWANGPC GSGDCSDQNL LSSTTSSCLE NSGRESARHD  60
GDKVSLGREL TEDKPEDCTS HQITEDSKDP TSSSGIGENP KTPSVDRETS SLKNASKNGE  120
QSETSISQEK TLKKPDQILP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR  180
NVPVGAGRRK NKNSSSSHYR HIIVSEALQR DRVNGLRYSK NGTVLTFGSD SPLCESMASV  240
LNLAGKTTYH VQNGFHTPGQ RTLVSGGDNG DDHSSGSSIT ASNSTEKEGI ALQESAVKNH  300
PGVPPHLPCF PGTPWPLQWN SAQWGSVMPP PSLSPSGFPV SFYPAPAYWG CTVPGSWNVQ  360
CLPPPSSFLS HTGQSSAMNT STLGKHSRDG NILNPANLES IKDQSSERCW IPKTSRINVS  420
DEAVKSSITP TLGTKHEKTN SVNGGGLFKA FQSKSNDKSH LIETSRVLQS NPAALSRSLN  480
FHEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807442.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A2I4DJY6	0.0	A0A2I4DJY6_JUGRE; cyclic dof factor 2-like
STRING	XP_008221604.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-102	cycling DOF factor 2