PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022582-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 701aa    MW: 77026.5 Da    PI: 6.7014
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022582-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23121222199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF  
  WALNUT_00022582-RA 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL- 208
                         89****************************996555555..89***********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  WALNUT_00022582-RA 209 -RAENGDLCVGIRRA 222
                         .4488999****997 PP
2Auxin_resp113.91.5e-37292375183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  WALNUT_00022582-RA 292 AATLAANGKAFEVVYYPRASTPEFCVKASMVKAALQIRWCAGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWPESPWRLLQ 375
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-37112225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-29115224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-21120221No hitNo description
PROSITE profilePS5086313.112121223IPR003340B3 DNA binding domain
SMARTSM010191.7E-21121223IPR003340B3 DNA binding domain
PfamPF023628.8E-22121222IPR003340B3 DNA binding domain
PfamPF065074.8E-33292375IPR010525Auxin response factor
PROSITE profilePS5174521.645615698IPR000270PB1 domain
SuperFamilySSF542772.16E-5618689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MITFMDSKEK LKEVEKCLDP QLWHACAGGM VQMPSVNAKV FYFPQGHAEH ACGNVDFRSC  60
PRVVPFIPCR VCAVKYMADP ETDEVFTKMR LVPVNANELD FEDDGIGGIN GSEAQEKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP EMTSGWNPAG  240
GSCAMPYGGF SAFLRDGESK LMRNCNSNGN GSSSNGNLMV RGKVRPESVI EAATLAANGK  300
AFEVVYYPRA STPEFCVKAS MVKAALQIRW CAGMRFKMAF ETEDSSRISW FMGTISSVQV  360
ADPLRWPESP WRLLQVTWDE PDLLQNVKCV SPWLVELVSN IPAMHLSPFS PPRKKLRLPQ  420
LPDFPLDGQL HMPTFSGNLL GPSSPFSCLP ENIPAGMQGA RHAHYGLSLS DLHLNKLQSG  480
LFPAGFPRLD HTATPARAPN NSIFQKPSMS ENVSCFLTMA HSQTPKKPDD VKSPQFVLFG  540
QPILTEQQIS LSCSGDTVSP VGTGNSSSDG NADKVTNFSD GSGCAHNRGI VERSSCEGLQ  600
WYKDNCQETE PNLETGHCKV FMESEDVGRS LDLSLLGSYE ELYRKLANMF SIENSETLSQ  660
VLYRDTTGAV KLMGDEPFSD FMKTARRLTI LMDSSSDNVG M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-771839651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018838364.10.0PREDICTED: auxin response factor 18-like
RefseqXP_018838365.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2I4G3C50.0A0A2I4G3C5_JUGRE; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]