PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00022520-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 13057.5 Da PI: 5.1787 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.8e-10 | 58 | 100 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E l+++ +++ G++ W++Ia +++ gRt++++ +w+ WALNUT_00022520-RA 58 KLEFSEDEVTLIARMFRLVGKR-WSLIAGRIP-GRTAEEIEKYWN 100 678*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.539 | 53 | 103 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.2E-8 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-9 | 59 | 101 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.81E-8 | 60 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-12 | 60 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-7 | 60 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MIASTTYQSL RTTSLPVFLN QLNDFWWRIM GELLDHATDD HDSNDQDTKG VKSNQDSKLE 60 FSEDEVTLIA RMFRLVGKRW SLIAGRIPGR TAEEIEKYWN SRPTSSSSTS GERS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808922.1 | 8e-80 | PREDICTED: uncharacterized protein LOC108982093 | ||||
TrEMBL | A0A2I4DP51 | 2e-78 | A0A2I4DP51_JUGRE; uncharacterized protein LOC108982093 | ||||
STRING | cassava4.1_026343m | 5e-26 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 3e-16 | MYB_related family protein |