PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00022503-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 371aa MW: 41129.9 Da PI: 7.993 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.7e-32 | 260 | 313 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ WALNUT_00022503-RA 260 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 313 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-15 | 257 | 313 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 258 | 313 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-23 | 260 | 313 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 261 | 312 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MPLEGIFIEP SSTPLPDLSL HISPPNSSSS SICTISNELD TRFDLLSQRE AHNSNSNISE 60 RTESQAHTEL SLGRNSRCGA EEAPHKPYQQ QRHLLYQSNN HLNHINHGVS LLDVSSDGLT 120 PIKGIPIYHS RSFPFLPMDP TRDKDPKMCF YQNPSYPSLS SSCSSLCTPS VSHSPSSYYG 180 GGLDPMSILN SVPNASSAAF RLGATTRFNG FSADAFKSQQ LHHHHDHHNQ YGIGPSEASH 240 GMMRSRFLPK LPTKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV LELMDVKDLT 300 LAHVKSHLQM YRTVKTTDKP AASSDELISP MGSACDHGLR PFADQRGQAD QRPIQQDVDY 360 PSSSLWSNSS R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-17 | 261 | 315 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-17 | 261 | 315 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-17 | 261 | 315 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-17 | 261 | 315 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-17 | 261 | 315 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018847093.1 | 0.0 | PREDICTED: transcription repressor KAN1-like isoform X1 | ||||
Refseq | XP_018847094.1 | 0.0 | PREDICTED: transcription repressor KAN1-like isoform X2 | ||||
TrEMBL | A0A2I4GT68 | 0.0 | A0A2I4GT68_JUGRE; transcription repressor KAN1-like isoform X1 | ||||
TrEMBL | A0A2I4GT78 | 0.0 | A0A2I4GT78_JUGRE; transcription repressor KAN1-like isoform X2 | ||||
STRING | VIT_04s0043g00340.t01 | 1e-152 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 1e-61 | G2-like family protein |