PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022449-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 303aa    MW: 34783.9 Da    PI: 6.5131
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022449-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l +++ ++G g+W+ ++ + g++R++k+c+ rw++yl
  WALNUT_00022449-RA  9 KGAWTAEEDIRLRKCIGEHGQGNWHQVPLRAGLNRCRKSCRQRWLNYL 56
                        79********************************************97 PP
2Myb_DNA-binding491.4e-1562107148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++t+E +l ++++k+lG++ W++Ia +++ gRt +++k++w++++
  WALNUT_00022449-RA  62 RGNFSTDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTHM 107
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20459IPR009057Homeodomain-like
PROSITE profilePS5129424.024460IPR017930Myb domain
SuperFamilySSF466891.57E-286103IPR009057Homeodomain-like
SMARTSM007173.2E-14858IPR001005SANT/Myb domain
PfamPF002491.7E-15956IPR001005SANT/Myb domain
CDDcd001671.05E-91156No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2260109IPR009057Homeodomain-like
SMARTSM007179.5E-1461109IPR001005SANT/Myb domain
PROSITE profilePS5129417.81761111IPR017930Myb domain
PfamPF002492.6E-1362106IPR001005SANT/Myb domain
CDDcd001673.32E-964107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVANLGLRKG AWTAEEDIRL RKCIGEHGQG NWHQVPLRAG LNRCRKSCRQ RWLNYLRPNI  60
KRGNFSTDEV DLMIRLHKLL GNRWSLIAGR LPGRTSNDVK NYWNTHMHKY VEEKPVLDVK  120
KVSVIKPQPR RVLSKNLTVL NGKPTVKEIS FRTEDDVRNY ISPTVMSYEK KFKTSTVQLD  180
NFEGNERSTC PISELDEEPN LWWKNLLDYC EGDVHRVTST ISGRDEEQNL WGGNLLNDCE  240
GDVQRAAYTK SGFDDQEPNT WADETSLLPE AHDSVGATFD EDGSSCTGAD HFPFENGLWD  300
FLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-21211151159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-21211151159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843189.10.0PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV93e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2I4GH240.0A0A2I4GH24_JUGRE; transcription factor MYB113-like
STRINGVIT_14s0006g01290.t017e-66(Vitis vinifera)
STRINGevm.model.supercontig_116.389e-66(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]