PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022387-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 326aa    MW: 36098 Da    PI: 5.6785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022387-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151472148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg..........kgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lv+++k+ Gg+ +W++ ++  g          + R++k+c++rw +yl
  WALNUT_00022387-RA 14 KGPWTPEEDEILVEYIKKNGGHgSWRSLPKLAGlslvtllvigLLRCGKSCRLRWTNYL 72
                        79*******************9***********************************97 PP
2Myb_DNA-binding50.93.6e-1678123148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE++l v+++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  WALNUT_00022387-RA  78 RGPFTQEEEKLVVQLHGILGNR-WASIAAQLP-GRTDNEIKNLWNTHL 123
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-22575IPR009057Homeodomain-like
PROSITE profilePS5129414.073972IPR017930Myb domain
SuperFamilySSF466898.24E-2711119IPR009057Homeodomain-like
SMARTSM007174.2E-111374IPR001005SANT/Myb domain
PfamPF002495.7E-141472IPR001005SANT/Myb domain
CDDcd001679.79E-91672No hitNo description
PROSITE profilePS5129425.83873127IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-2676128IPR009057Homeodomain-like
SMARTSM007172.1E-1477125IPR001005SANT/Myb domain
PfamPF002491.2E-1478123IPR001005SANT/Myb domain
CDDcd001675.50E-1180123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRAPCCDKR GLKKGPWTPE EDEILVEYIK KNGGHGSWRS LPKLAGLSLV TLLVIGLLRC  60
GKSCRLRWTN YLRPDIKRGP FTQEEEKLVV QLHGILGNRW ASIAAQLPGR TDNEIKNLWN  120
THLKKRLVCM GLDPQTHEPV NSCSTTIKAP ASPTTRHMAQ WESARLEAEA RLSRESSLFH  180
PNPVGGTDSD YFLRIWNSEV GESFRKFSMG DKTLCQSPVS QASSSTKCGS MSAITTEICP  240
ILGGSSIAGS NQNEDTECKS CKSYTEEMMA ASDCSSSDEL EDSSENALQL LLDFPINNDM  300
SFLEEDLDMY ALPPAMLTES SFICHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121275108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845395.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ9M2D91e-127MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2I4GNC10.0A0A2I4GNC1_JUGRE; transcription repressor MYB6-like
STRINGEOX960131e-175(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-124myb domain protein 17