PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022368-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 496aa    MW: 54021.2 Da    PI: 6.7029
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022368-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix544.4e-17113207186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyf 82 
                         +W++  + +L++a +e+ ++l+rg+l + +We+v++++       r  g  +s +qCk+k++nl+kryk ++++ +    t + +s++p+f
  WALNUT_00022368-RA 113 EWSDTAIACLLDAFTEKYNQLNRGNLWGRDWEKVAENVsdrcggeRTSGTYKSVEQCKNKIDNLKKRYKVEQQRIRAAggTGTGTSHWPWF 203
                         5********************************************************************99998776545899999***** PP

            trihelix  83 dqle 86 
                         +++e
  WALNUT_00022368-RA 204 KKIE 207
                         **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.1E-19111209No hitNo description
Gene3DG3DSA:3.40.1160.105.1E-71251489IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.84255490IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.44E-57256489IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.86E-114258490No hitNo description
PfamPF006961.0E-24259469IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGSDDDDDFP LIDSTSSSHP HHHAHTRQTP TDQTSINGSN IDRHDGDYYP HHQAPFEVED  60
EDESDLNKSV PGAPVPAKRT TPYYHKKRIS DPVAGNKNES ESENGSYRKD REEWSDTAIA  120
CLLDAFTEKY NQLNRGNLWG RDWEKVAENV SDRCGGERTS GTYKSVEQCK NKIDNLKKRY  180
KVEQQRIRAA GGTGTGTSHW PWFKKIEAIA GNSSLAKSGS DEDRASLPTP RPSKRYMPSN  240
ASLVNNIKSK PISNLKWRRV VFKISGTALA GNCQSIDPKV AMQVAKEIES ASRLGVEVAI  300
VVGGRNFFSG DTWVSATGLD RPTAYQIGMM ATVMNSILLQ SALEKLGVQT RVQSAFAMPD  360
VAEPYSRQRA IRHLEKGRVV IFGGVGAGIG TGNPLFTTDT AAALRASEIN ADAVLKGTSV  420
NGVYDCHSGN NITLDHVSYG DVISSGITSM DLMALTYCEE NGIPVVVFNL LEPGNISRAL  480
CGDQVGTLID QAGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-652494891239Uridylate kinase
3ek5_B2e-652494891239Uridylate kinase
3ek5_C2e-652494891239Uridylate kinase
3ek5_D2e-652494891239Uridylate kinase
3ek5_E2e-652494891239Uridylate kinase
3ek5_F2e-652494891239Uridylate kinase
3ek6_A2e-652494891239Uridylate kinase
3ek6_B2e-652494891239Uridylate kinase
3ek6_C2e-652494891239Uridylate kinase
3ek6_D2e-652494891239Uridylate kinase
3ek6_E2e-652494891239Uridylate kinase
3ek6_F2e-652494891239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845366.10.0PREDICTED: uncharacterized protein LOC109009367 isoform X1
TrEMBLA0A2I4GN900.0A0A2I4GN90_JUGRE; uncharacterized protein LOC109009367 isoform X1
STRINGGLYMA10G34520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-164Trihelix family protein