PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00022180-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 418aa MW: 45552.5 Da PI: 6.0909 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 133.2 | 9.1e-42 | 178 | 274 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 klfqrlwse+Dei++L+Gl+d+++k+g++p+ d af+efvkks++++vsk+ql++KirrL+kK+k++ + k+gkep+fsk+h+qk++el WALNUT_00022180-RA 178 KLFQRLWSEDDEIAILKGLLDYTEKRGADPFTDAAAFHEFVKKSLHVDVSKNQLMDKIRRLRKKYKNNAGRGKKGKEPTFSKPHEQKAYEL 268 579**************************************************************************************** PP DUF573 92 skkiWg 97 skkiWg WALNUT_00022180-RA 269 SKKIWG 274 *****9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.7E-37 | 180 | 274 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 418 aa Download sequence Send to blast |
MAPKRQSHLD DPPAASSSEE EVASSEEEEE EHEDEEEGSA SSEEEAEPTK TSSLPSTPLP 60 DKKAPSKKPD PPLTKPQSSS SGSGSESESE SDSGATPNPT VKPIASKPME DAAPKATTKP 120 RSKPSSTTPA RSVATKRPNN ETDIKDSSKR AKKKAPEPNT DGAVSPGDSK KSAGEEKKLF 180 QRLWSEDDEI AILKGLLDYT EKRGADPFTD AAAFHEFVKK SLHVDVSKNQ LMDKIRRLRK 240 KYKNNAGRGK KGKEPTFSKP HEQKAYELSK KIWGPAEGTG GGGGVEDGKS NGKAASRKNN 300 QKVNTGRSLK DELLAVSPIA NKEVEKMDND GNPGLGSDSL RSLDEVVRFD KNMSVAGLEE 360 GVIKRGLELI GKDKRAELEE RWKEVQMAEL EVFVKRTELI RDQARLILEA YKAAENDH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018805542.1 | 0.0 | PREDICTED: probable transcription factor At1g61730 | ||||
TrEMBL | A0A2I4DEH0 | 0.0 | A0A2I4DEH0_JUGRE; probable transcription factor At1g61730 | ||||
STRING | XP_008439944.1 | 1e-107 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61730.1 | 2e-37 | DNA-binding storekeeper protein-related transcriptional regulator |