PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022028-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 464aa    MW: 52385.7 Da    PI: 4.846
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022028-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.81.1e-081660341
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        +r C+ + + ++++fC  ++ +lC+ C  + H+       H++v+
  WALNUT_00022028-RA 16 ARACDSCLRRRARWFCAADDAFLCQACDASVHSAnqlasrHERVQ 60
                        578*****************************6688888898876 PP
2CCT67.92.8e-23400443144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++
  WALNUT_00022028-RA 400 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 443
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.0211461IPR000315B-box-type zinc finger
SMARTSM003361.9E-111461IPR000315B-box-type zinc finger
PfamPF006432.8E-71660IPR000315B-box-type zinc finger
CDDcd000215.24E-101761No hitNo description
PfamPF062038.7E-18400442IPR010402CCT domain
PROSITE profilePS5101716.043400442IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MITEKKAANA VGGKTARACD SCLRRRARWF CAADDAFLCQ ACDASVHSAN QLASRHERVQ  60
LQTSSVKPKN ERSRTDDDSP PAWHRGFTRK ARTPRHNKPI SVQQQAKEEE NVLELLPVVP  120
EIGSEVDSPD ACNEEHELLY RVPIFDPFAA ELCHEMENTI EDERTTMGMK NEVGTVVGDD  180
YGQGGVCDYD DLHGFLSSEM ELAGFAADVE SLLGKGLDDE ESAADIKGLG LLGYCKEEDG  240
NDLCIDVGER RVKVEEEDQG MEAAIVACDD QLNPLMVENM RETLDWKFDY ELQQFAGDQD  300
QEKVTPMAEK ETMCGKGSCE EEMKRKEMFL RLNYEEVIKA WAGQGCPWTT GTRPELNPDK  360
YCWPDFMGEA HDQPAYGETG VVVGINGDEN HAGWRDHEGR EARVSRYREK RRTRLFSKKI  420
RYQVRKLNAE KRPRMKGRFV KRTSTFLMGT SIPTAAAAFP YLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410426RRTRLFSKKIRYQVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851315.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A2I4H5820.0A0A2I4H582_JUGRE; zinc finger protein CONSTANS-LIKE 6-like
STRINGEOY210201e-149(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-90B-box type zinc finger protein with CCT domain