PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021898-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 370aa    MW: 42009.9 Da    PI: 5.7399
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021898-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
  WALNUT_00021898-RA 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding44.24.4e-1467110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg ++ +E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00021898-RA  67 RGMFSHQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                         7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-24664IPR009057Homeodomain-like
PROSITE profilePS5129424.074965IPR017930Myb domain
SuperFamilySSF466899.73E-2912108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
CDDcd001671.58E-101761No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
SMARTSM007177.8E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.74266116IPR017930Myb domain
PfamPF002493.4E-1367110IPR001005SANT/Myb domain
CDDcd001672.33E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRHSCGLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SHQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG  120
IDPTTHKPLS EVEPKEEKKL AEMAALYIPE SQELQTISTL ASQSPAFLLE DSNYYEGEIT  180
EASGEHLMYK PAIDPLPYFQ FQEGANSNGY DSSFLLQHHP TMIRAPIDQS HLETHSNYGF  240
TSMPSLANSD HGNFSGTEFS DNSGSRMSSF FLDEVKESSS NSSNMSSYAG FQMNSTVENV  300
AFSWDYADKK LDYCSFPFQV NEIKSEELKP SSWQEGQLHV HSSDHDFKSY SLTSLSEVLR  360
AANFDAFNQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808176.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2I4DLZ70.0A0A2I4DLZ7_JUGRE; myb-related protein Myb4-like
STRINGPOPTR_0015s09430.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.14e-81myb domain protein 50