PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021886-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | GRAS | ||||||||
Protein Properties | Length: 456aa MW: 50712.1 Da PI: 6.6459 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 361.6 | 1.1e-110 | 84 | 455 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsP 89 lv+lL++cAeav+ +d + a+ lL++l+ +a g+++qR+a++f+++La rla ++ + +++ + ++ ++++ al+l ++ +P WALNUT_00021886-RA 84 LVRLLVACAEAVACRDRTHASVLLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGAVGFAAPMMNIMDvaTDKQEEALSLIYQNCP 174 689**************************************************99555444444444444444447788889999****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175 ++f+h++aN +Ilea+eg++ +H++D++++ +G QW aL+++La+R+++pp +lRiTgvg s ++ + +g+ L A+++g++ WALNUT_00021886-RA 175 HIQFGHFVANTTILEAFEGKSILHVVDLGMTlglaHGHQWCALIHSLADRDGQPPcHLRITGVGL----SVDRFRVIGDELGTRAKNVGIS 261 ***************************98652333889*************88888*********....9********************* PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 fef+v v+++le+l++e+++ + gE+l+Vn++lqlh +++es + ++L+++ +lsPkv+ +veq+++hn++ Fl rf+eal+yysa WALNUT_00021886-RA 262 FEFSV-VESNLENLQTEDIKHQDGEVLVVNSILQLHCVVKESRGALN---SLLQIIHKLSPKVLLLVEQDSSHNGPFFLGRFMEALHYYSA 348 ****9.7********************************88877777...8**************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356 +fdsl++ lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+rl++aGF+++p++ +qak l k k + gy++ e++g WALNUT_00021886-RA 349 IFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPARVERHEKVDQWRRRLSRAGFQAAPMK--LIAQAKQWLGKNKgFLGYTIVEDKG 437 **************************************************************96..67799999999999*********** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 +lvlgWk+rp+v++S+W+ WALNUT_00021886-RA 438 CLVLGWKSRPIVAASCWK 455 *****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.815 | 58 | 436 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-108 | 84 | 455 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MAQNFFSNHE VYNGESCEAV SAHDFCLSAM ACYPNNPYMP ILDNNSNAST LIRQPFSDEI 60 QDHKRLKQTE SGTEEDGSAD GMRLVRLLVA CAEAVACRDR THASVLLSEL RANALVFGSS 120 FQRVASCFVQ GLADRLALVQ PLGAVGFAAP MMNIMDVATD KQEEALSLIY QNCPHIQFGH 180 FVANTTILEA FEGKSILHVV DLGMTLGLAH GHQWCALIHS LADRDGQPPC HLRITGVGLS 240 VDRFRVIGDE LGTRAKNVGI SFEFSVVESN LENLQTEDIK HQDGEVLVVN SILQLHCVVK 300 ESRGALNSLL QIIHKLSPKV LLLVEQDSSH NGPFFLGRFM EALHYYSAIF DSLDVMLPKY 360 DTKRAKMEQF YFAEEIKNIV SCEGPARVER HEKVDQWRRR LSRAGFQAAP MKLIAQAKQW 420 LGKNKGFLGY TIVEDKGCLV LGWKSRPIVA ASCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-62 | 55 | 454 | 2 | 378 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808049.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A2I4DLM4 | 0.0 | A0A2I4DLM4_JUGRE; DELLA protein RGL1-like | ||||
STRING | POPTR_0015s10310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-81 | RGA-like 1 |