PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021886-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 456aa    MW: 50712.1 Da    PI: 6.6459
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021886-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.61.1e-110844551374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsP 89 
                         lv+lL++cAeav+ +d + a+ lL++l+ +a   g+++qR+a++f+++La rla  ++  +  +++   + ++  ++++  al+l ++ +P
  WALNUT_00021886-RA  84 LVRLLVACAEAVACRDRTHASVLLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGAVGFAAPMMNIMDvaTDKQEEALSLIYQNCP 174
                         689**************************************************99555444444444444444447788889999****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175
                          ++f+h++aN +Ilea+eg++ +H++D++++    +G QW aL+++La+R+++pp +lRiTgvg     s ++ + +g+ L   A+++g++
  WALNUT_00021886-RA 175 HIQFGHFVANTTILEAFEGKSILHVVDLGMTlglaHGHQWCALIHSLADRDGQPPcHLRITGVGL----SVDRFRVIGDELGTRAKNVGIS 261
                         ***************************98652333889*************88888*********....9********************* PP

                GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                         fef+v v+++le+l++e+++ + gE+l+Vn++lqlh +++es    +   ++L+++ +lsPkv+ +veq+++hn++ Fl rf+eal+yysa
  WALNUT_00021886-RA 262 FEFSV-VESNLENLQTEDIKHQDGEVLVVNSILQLHCVVKESRGALN---SLLQIIHKLSPKVLLLVEQDSSHNGPFFLGRFMEALHYYSA 348
                         ****9.7********************************88877777...8**************************************** PP

                GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                         +fdsl++ lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+rl++aGF+++p++    +qak  l k k + gy++ e++g
  WALNUT_00021886-RA 349 IFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPARVERHEKVDQWRRRLSRAGFQAAPMK--LIAQAKQWLGKNKgFLGYTIVEDKG 437
                         **************************************************************96..67799999999999*********** PP

                GRAS 357 slvlgWkdrpLvsvSaWr 374
                         +lvlgWk+rp+v++S+W+
  WALNUT_00021886-RA 438 CLVLGWKSRPIVAASCWK 455
                         *****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.81558436IPR005202Transcription factor GRAS
PfamPF035143.8E-10884455IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAQNFFSNHE VYNGESCEAV SAHDFCLSAM ACYPNNPYMP ILDNNSNAST LIRQPFSDEI  60
QDHKRLKQTE SGTEEDGSAD GMRLVRLLVA CAEAVACRDR THASVLLSEL RANALVFGSS  120
FQRVASCFVQ GLADRLALVQ PLGAVGFAAP MMNIMDVATD KQEEALSLIY QNCPHIQFGH  180
FVANTTILEA FEGKSILHVV DLGMTLGLAH GHQWCALIHS LADRDGQPPC HLRITGVGLS  240
VDRFRVIGDE LGTRAKNVGI SFEFSVVESN LENLQTEDIK HQDGEVLVVN SILQLHCVVK  300
ESRGALNSLL QIIHKLSPKV LLLVEQDSSH NGPFFLGRFM EALHYYSAIF DSLDVMLPKY  360
DTKRAKMEQF YFAEEIKNIV SCEGPARVER HEKVDQWRRR LSRAGFQAAP MKLIAQAKQW  420
LGKNKGFLGY TIVEDKGCLV LGWKSRPIVA ASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-62554542378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808049.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4DLM40.0A0A2I4DLM4_JUGRE; DELLA protein RGL1-like
STRINGPOPTR_0015s10310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-81RGA-like 1