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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | WALNUT_00021799-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family | NAC | ||||||||
| Protein Properties | Length: 671aa MW: 76709.6 Da PI: 5.5892 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 179.6 | 8e-56 | 7 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
ppGfrFhPtdeelv +yLk+k++g+++el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd+
WALNUT_00021799-RA 7 PPGFRFHPTDEELVAYYLKRKINGREIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDR 96
9****************************.99***************6434555777********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+v s ++++vg+kktLv+y+grap+g +t Wvmheyrl
WALNUT_00021799-RA 97 KVNS-QTRAVGMKKTLVYYRGRAPHGARTGWVMHEYRL 133
****.9999***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 2.48E-64 | 4 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 61.421 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 3.2E-30 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 671 aa Download sequence Send to blast |
MAPVSFPPGF RFHPTDEELV AYYLKRKING REIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GARTGWVMHE YRLDERECET ASGLQDAYAL CRVFKKSTTG PKIGEQHYPP ITTNQLMTSE 180 HSSSIDLYSE GRCEDLESSN YPMQYDSCSS SMLTGSSQLD ITTGTRTDGK WMQFLSEDAF 240 NFTPPPLPNY ETVSYPPSKV DIALECARLQ HRFSLPPLEV KDHDHFSQAE FSDFRMSQSI 300 PLHESTAHET DILQEILSVA QASQELINQS NLPDTWGGNY APDDDFSFLI DRDTHNQAGD 360 LSLYERYIDK SWEDSSTIRT IQINGDLDHE DHQTERLATE NLRWSHVMEE HKIVPIEDIS 420 SSFRRREESD EFQGESGDNK RCKEFNDTEI NMISLQPLEF INEDAPNENL QLDDGINTYR 480 EDYSSSPSFE VIEEVRFNHG MFISTRQVAK TFFHQTVPSQ TVKIHLNPVM MSKFSIEKAD 540 NSHIGSDNKD SFFGKFKAVI CMVALSLVHI YHVGGYMEEE KLIVDGFSAT GKVLKGCSNY 600 MKYRNVRKRS PARSIEADHD HRKNEHEVSV VIKTSEGGNS LSAFSKSTKI FLTVSLAVCT 660 VWANRIIYAN T |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 5e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 4e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 5e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 5e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00212 | DAP | Transfer from AT1G65910 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018846352.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like isoform X1 | ||||
| TrEMBL | A0A2I4GR40 | 0.0 | A0A2I4GR40_JUGRE; NAC domain-containing protein 45-like isoform X1 | ||||
| STRING | XP_008227899.1 | 0.0 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4421 | 34 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 1e-154 | NAC domain containing protein 28 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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