PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021755-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 255aa    MW: 28442.9 Da    PI: 8.9931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021755-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-141562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT+ Ed++l+ ++k +G g W+  +++ g++R++k+c++rw++yl
  WALNUT_00021755-RA 15 RGTWTAIEDKILKGYIKIHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 62
                        89********************************************97 PP

2Myb_DNA-binding54.33.2e-1768112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w+++
  WALNUT_00021755-RA  68 RGNITNDEEELIIKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 112
                         7999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.321062IPR017930Myb domain
SuperFamilySSF466891.41E-2712109IPR009057Homeodomain-like
SMARTSM007178.2E-121464IPR001005SANT/Myb domain
PfamPF002491.4E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-211669IPR009057Homeodomain-like
CDDcd001672.21E-91762No hitNo description
PROSITE profilePS5129425.69963117IPR017930Myb domain
SMARTSM007175.7E-1667115IPR001005SANT/Myb domain
PfamPF002494.5E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2470116IPR009057Homeodomain-like
CDDcd001672.64E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRSPRCSKD QSLNRGTWTA IEDKILKGYI KIHGEGKWRN LPKRAGLKRC GKSCRLRWLN  60
YLRPGIKRGN ITNDEEELII KLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THIGRKVLLG  120
HPNPTSKRRS SSSSSNQAQE KPNPAKASAV MEPPKANTGF LVNTDFSELS SSCFENNNIN  180
NEGGSSSTTC DKVHSSPTFI DHALLVSKET ELHGSEDFQL MAPDLTESES LDLLFVSEDT  240
LHGSEVNSDD QSKLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840916.11e-108PREDICTED: transcription repressor MYB4-like
SwissprotQ9SZP19e-61MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A2I4GAJ71e-106A0A2I4GAJ7_JUGRE; transcription repressor MYB4-like
STRINGEMJ184612e-76(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-50myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]