PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021755-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28442.9 Da PI: 8.9931 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed++l+ ++k +G g W+ +++ g++R++k+c++rw++yl WALNUT_00021755-RA 15 RGTWTAIEDKILKGYIKIHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w+++ WALNUT_00021755-RA 68 RGNITNDEEELIIKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 112 7999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.32 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.41E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.21E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.699 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-12 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRSPRCSKD QSLNRGTWTA IEDKILKGYI KIHGEGKWRN LPKRAGLKRC GKSCRLRWLN 60 YLRPGIKRGN ITNDEEELII KLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THIGRKVLLG 120 HPNPTSKRRS SSSSSNQAQE KPNPAKASAV MEPPKANTGF LVNTDFSELS SSCFENNNIN 180 NEGGSSSTTC DKVHSSPTFI DHALLVSKET ELHGSEDFQL MAPDLTESES LDLLFVSEDT 240 LHGSEVNSDD QSKLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 12 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840916.1 | 1e-108 | PREDICTED: transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 9e-61 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A2I4GAJ7 | 1e-106 | A0A2I4GAJ7_JUGRE; transcription repressor MYB4-like | ||||
STRING | EMJ18461 | 2e-76 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-50 | myb domain protein 4 |