PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00021717-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 724aa MW: 78960.6 Da PI: 6.1427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 309 | 329 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg WALNUT_00021717-RA 309 PCPDFRK-GACRRGDMCEYAHG 329 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12796 | 3.8E-10 | 83 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.44E-16 | 86 | 167 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.43E-14 | 87 | 166 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.5E-17 | 88 | 169 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0041 | 88 | 118 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.245 | 88 | 196 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.001 | 123 | 155 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.541 | 123 | 158 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-5 | 309 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 337 | 367 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 42 | 339 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 724 aa Download sequence Send to blast |
MCCVSEWLKF SLSPTLASIS IDESRPSNID MMNHLTVETE DAFASLLELA ANNDIEGFKR 60 SIECDPSGID EIGLWYGRKK GSKQMVYEHR TPLMVAATYG SIDVMKLILS LSEADINRSC 120 GLDKSTALHC AASGGAVNAV DAVKLLLASG ADPNLIDANG HCPIDVIVVP PKLQDVKLTL 180 VELLKTDGSN VEHKLTIVTG TLSSSSPPLS SSPENGSPST ADFTSSPTKV NFSDLPVSSV 240 SEKKEYPVDP SLPDIKNSIY STDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRICKDGTN CARRVCFFAH 360 TAEELRPLYV STGSAVPSPR SSTSGATAMD FAAAMNLLPG SPSPFTPPMS PSANGMSHSA 420 WPQPNVPALH LPGSNVQSSR LRSSLNARDI PAEDFDMFPD FDLQQQQLLN EFSCFSQPSM 480 SSNSLNRSGR FKTLTPSNLD DLFSAESSSP RYTDQALASA VFSPTHKSAV LNQFQQQSML 540 SPINTNYSPK NVDHHLLQSS FAVPTSGRMS PRSVEPISPM SSRVSMLAQR EKQQQFRSLS 600 SRELGSNSAS IVGSPVNSWS KWGSSNGKLD WAVSTDELGK LRRSSSFEFG NNGEEPDLSW 660 VQSLVKESPT DIKEKLATPV SDVAATASAG EGPTMTSQIE SVDHAVLGAW LEQMKLDHLV 720 AQQN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 83 | GRKKGSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842333.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_018842334.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2I4GEK7 | 0.0 | A0A2I4GEK7_JUGRE; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_010092985.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
---|---|---|---|
|