PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021702-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 242aa    MW: 27155.9 Da    PI: 7.9064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021702-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-1474120354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  WALNUT_00021702-RA  74 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVERVKEL 120
                         78*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.17171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-1473123No hitNo description
PfamPF000101.4E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1474129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1474133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-5157220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLQPENQDLY RFFTGNGAFI NVGVPYGFPA NCDDQFPAGG MQSFCSTSSS YYPSLEVSGL  60
LNSPPQDRAL AAQKNHKEAE KRRRERINSH LDKLRSLLPC NSKTDKASLL AKVVERVKEL  120
KEQTSQITEL ETFPSETDEI TVLSGDHSDG RLIFKASLCC EDRTDLMPDL IEILKSLHLT  180
TLRAEMATLG GRIRNVLIVA ADKDHSIESV HFLQNALKSL LERSSSSDKS KRRRTLDRKI  240
VM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814123.11e-180PREDICTED: transcription factor bHLH106
SwissprotO806742e-80BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2I4E4061e-178A0A2I4E406_JUGRE; transcription factor bHLH106
STRINGXP_008240669.11e-123(Prunus mume)
STRINGEOY088091e-123(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]