PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021643-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 319aa    MW: 34255.1 Da    PI: 4.6249
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021643-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.5e-16229265135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  WALNUT_00021643-RA 229 CTHCGISSksTPMMRRGPTGPRTLCNACGLKWANKGV 265
                         *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.1E-478110IPR010399Tify domain
PROSITE profilePS5132010.04978113IPR010399Tify domain
PfamPF062003.5E-882104IPR010399Tify domain
PfamPF062032.5E-16156198IPR010402CCT domain
PROSITE profilePS5101713.314156198IPR010402CCT domain
SMARTSM004012.0E-12223276IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.433223280IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12226274No hitNo description
Gene3DG3DSA:3.30.50.101.4E-15227270IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.99E-15228271No hitNo description
PfamPF003206.2E-14229265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPESNRQASM FNSGAMTNNI ESQIEDEDED VAGGEESIDN PQIRFEDGAV AVTFNGGVQE  60
VAPNTIYVPS SDYPPVAGNG GADQLTLSFQ GEVYVFDAVS PDKVLVFAYG WLLNFVNLLL  120
LLGGYEIPSG IPAMGTVPLN QRGMNDFPGR SIQPQRAASL SRFREKRKER CFDKKIRYSV  180
RKEVALRMQR KKGQFTSSKA ISDEAGSDSS VYGATQGPGQ DDTMQETSCT HCGISSKSTP  240
MMRRGPTGPR TLCNACGLKW ANKGVLRDLS KVSTMGVQDP SLKATEQGDG DASESDAVTP  300
VAEIVSTANG DNSAVTAER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811236.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL74e-71GAT24_ARATH; GATA transcription factor 24
SwissprotQ8H1G06e-71GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2I4DVR10.0A0A2I4DVR1_JUGRE; GATA transcription factor 24-like
STRINGXP_010112233.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]