PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021571-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 398aa    MW: 45150.9 Da    PI: 5.2161
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021571-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.91.5e-24286370186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW++ ev+aLi++r  +e+++  + +k   Wee+s  m+  g++r++k+Ckekwen+nk++++  e+ kk+ s + +tc yf++l+
  WALNUT_00021571-RA 286 RWPEAEVQALITLRAALEHKSCLTGSKRSMWEEISVGMWGMGYNRTAKKCKEKWENINKYFRRSMESGKKH-SANGKTCHYFHELN 370
                         8*********************************************************************9.56667*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-4285342IPR009057Homeodomain-like
SuperFamilySSF466899.92E-5285345IPR009057Homeodomain-like
PfamPF138377.5E-18285371No hitNo description
CDDcd122035.00E-22285349No hitNo description
PROSITE profilePS500907.364286343IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEPFAGDRGV PDPDEAFPDH VTPFPDTMDL IYDHPTAAVH SPELVAHLQN LPPQKLRPIR  60
CFNFRSPEKL EETQRRCSPE EAVALGSING PVAEVPGECF GHPVKVEVGE AFKIGKGLAA  120
DDSERFGSVT GWGEWGPNCV EEDVESGTSS SSSDDDSTAN MKEPMNRKRK GKSSRKLELF  180
LESLVNKVLE KQEQMHKQLI EMIEKRERER IIREEAWKQQ EMERMKREEE MRAVETSRSL  240
ALISFIQNLS GQEIPVPQPV NTQCKEEDGS EIGMEHDIKC DPNGKRWPEA EVQALITLRA  300
ALEHKSCLTG SKRSMWEEIS VGMWGMGYNR TAKKCKEKWE NINKYFRRSM ESGKKHSANG  360
KTCHYFHELN MLYSNGLMDP GLLVKITDSE TEAKSENE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018856398.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2I4HJQ60.0A0A2I4HJQ6_JUGRE; trihelix transcription factor GTL1 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-42Trihelix family protein