PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021388-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 953aa    MW: 106400 Da    PI: 4.8433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021388-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10547348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  WALNUT_00021388-RA  5 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 47
                        7*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.13151IPR017930Myb domain
SMARTSM007175.2E-11249IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-11452IPR009057Homeodomain-like
CDDcd116591.78E-27450No hitNo description
Gene3DG3DSA:1.10.10.601.7E-10548IPR009057Homeodomain-like
PfamPF139211.4E-9662No hitNo description
PfamPF118311.2E-57351600IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MYETEWTREE DEKLLHLAKL MPTQWRTIAP IVGRTPSQCL ERYEKLLDAA CAKDDNYEAS  60
EDPRKLRPGE IDPNPESKPA RPDPIDMDED EKEMLSEARA RLANTKGKKA KRKAREKQLE  120
EARRLASLQK RRELKAAGID TRQRKRKRKG IDYNSEIPFE KKPPPGFYDV ADEDRPVEQA  180
QFPTTIEELE GKRRMDMETQ LRKQDIAKNK IAQRQDAPSA ILQANKLNDP ETVRKRSKLM  240
LPAPQISDHE LEEIAKMGYA SDILVGSEEL SEGSGATRAL LANYSQTPQP GMTPLRTPQR  300
TPAGKGDAIM MEAENLARLR ESQTPLLGGQ NPELHPSDFS GVTPKKREIQ TPNPLLTPSA  360
TPGGVSLTPR IGMTPSRDGY FNMTPKGTPV RDELHINEDM DVQDSAKLDQ RRQADLRRNL  420
RSGLINLPQP KNEYQIVMQP VLEDNEEPEV KIEEDMSDRI AREKAVEEAR QQALLRKRSK  480
VLQRELPRPP AASLDLIRNS LIRADEDKSS FVPPTSIEQA DEMIRKELLS LLEHDSAKYP  540
LEKKLTKEKK KSVKHSANGP GYVPEIDGFE EDELKEADTL IGEEARYLRL AMGHENQSLD  600
EFVEAHSTCL NDLMYFPTRN AYGLSSVAGN MEKLAALQNE FENVKKKMDG DKAKAESLEN  660
KVKVLTHGYE TRAKTAHWPK IAATLKQMDT AATELECFRA LQKQEQLAAS HRINSLWEEV  720
QRQKELERTL QMRYGDLVAE LDRTQYLMEK YRVQAEEQEA IAAKNHTLEL AKAAEDQTLA  780
QSIVTDTPIL STDPIDGNAV QQMDAKQELA YASPKSDMDV DAQNEHPQLC VVENFPTSSP  840
TAVEQEATTP VQGNTFEGTD IQLSLPGRDN PKAVPGMVTA IDSGDGAAGA NITTEVTKEN  900
PYSGDPQNVA EAVSLDGGLS KQEDCVPETA GNDSCDGGDA MQVSAGDGGH TDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-177474061794Cell division cycle 5-like protein
5xjc_L1e-177474061794Cell division cycle 5-like protein
5yzg_L1e-177474061794Cell division cycle 5-like protein
5z56_L1e-177474061794Cell division cycle 5-like protein
5z57_L1e-177474061794Cell division cycle 5-like protein
5z58_L1e-177474061794Cell division cycle 5-like protein
6ff4_L1e-177474061794Cell division cycle 5-like protein
6ff7_L1e-177474061794Cell division cycle 5-like protein
6icz_L1e-177474061794Cell division cycle 5-like protein
6id0_L1e-177474061794Cell division cycle 5-like protein
6id1_L1e-177474061794Cell division cycle 5-like protein
6qdv_O1e-177474061794Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129148KRRELKAAGIDTRQRKRKRK
2143148RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839043.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2I4G5640.0A0A2I4G564_JUGRE; cell division cycle 5-like protein
STRINGcassava4.1_000851m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]