PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021346-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 25461.9 Da PI: 10.5414 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 110 | 154 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++eE++ ++ + ++lG+g+W+ I+ + ++Rt+ q+ s+ qk+ WALNUT_00021346-RA 110 YWSEEEHLAFLVGLEKLGKGNWRGISTNFVTTRTPIQVASHAQKH 154 7******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.106 | 101 | 159 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-14 | 105 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-8 | 107 | 157 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 110 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.7E-14 | 110 | 158 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-10 | 110 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.35E-8 | 111 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MARKCSCCGD MGHNLRTCIT HKMSLTGNKY FRLFGVQLDL SSSSSSSSAS SSFVMRKSFS 60 MDGLSNWFTP SSSSSSDLTT DGKFPDQCTE LISDGVVTTR NRKRKKGVQY WSEEEHLAFL 120 VGLEKLGKGN WRGISTNFVT TRTPIQVASH AQKHFLRQIK TCPNKRKRSR PSLFDVRMPK 180 FTPQIHSSST EASVDPLMES SSKITSSAVL DCRALNHRIN GRNYWPF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 105 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845795.1 | 1e-169 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | A0A2I4GPH1 | 1e-168 | A0A2I4GPH1_JUGRE; transcription factor MYB1R1-like | ||||
STRING | VIT_11s0016g02410.t01 | 3e-45 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 6e-37 | MYB_related family protein |