PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021261-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 340aa    MW: 38492.9 Da    PI: 7.4963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021261-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05178197120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  WALNUT_00021261-RA 178 FSCPLCFKTFNRYNNMQMHM 197
                         89*****************9 PP
2zf-C2H214.69.5e-05262284123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  WALNUT_00021261-RA 262 FMCRKCGKAFAVRGDWRTHEKNC 284
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61178200IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-5178197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66178205IPR007087Zinc finger, C2H2
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-6243282No hitNo description
Gene3DG3DSA:3.30.160.609.1E-6258282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549262282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808262282IPR007087Zinc finger, C2H2
SMARTSM00355190288311IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTDPYSSYFP AGWFNLNSLH HFTSSKSSNP SIYDQSYDHY CSNNNISTTS FTYFESSPPS  60
PPLKEALPLL SLSPRIYEEK DQSSCSAKEV DKNKLDRSEE TLFSSTSADD DDTVTLSLNL  120
GLPSPSTSSD LISRLSSTEI SDKDDVVTVA SGYPSNRLNK GQYWIPTPAQ ILIGPTQFSC  180
PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCYCCAPG CRNNIDHPRS  240
KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC TCGSDFKHKR  300
SLKDHIKAFG HGHAAYGIDH FEELEDEVAS EIEQDNESSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956331e-149BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807465.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-136ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2I4DJY30.0A0A2I4DJY3_JUGRE; zinc finger protein WIP2-like
STRINGEOY326021e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]