PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021224-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 331aa    MW: 36195.6 Da    PI: 7.2456
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021224-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.49.7e-3563120359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          v+YkeClkNhAaslGgha+DGCgEfmps++++  ++++lkCaACgCHRnFHRre+e+
  WALNUT_00021224-RA  63 VVTYKECLKNHAASLGGHALDGCGEFMPSPSATpVDPTSLKCAACGCHRNFHRREPED 120
                         589*****************************99********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-2964118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2464120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-3165117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.31366117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.56E-19189262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-30195262IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-27201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDITPTITTT NTNTISATKS PEADSETPTR IQPSSKPLSF SNGVLKRHNP HHHHHHLTTP  60
QLVVTYKECL KNHAASLGGH ALDGCGEFMP SPSATPVDPT SLKCAACGCH RNFHRREPED  120
PIPTSATTHV IEYQPHHRHH PPPPPPVSNR SPNSASPPPI SSSYYPSAPH MLLALSGGLS  180
VQPESAAGPT NPMVSPSPNA RKRFRTKFSQ EQKEKMHLFA ERVGWKMQKR DQELVQEFCN  240
EIGVERGVLK VWMHNNKNTF GRRDADADDT GNRPNTNNIL EQTHNNGNDN GNGNGNEDDN  300
NNNETNNLGE NPNHYQSDSG AHGANGSSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-222022591875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814014.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-79ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2I4E3N70.0A0A2I4E3N7_JUGRE; zinc-finger homeodomain protein 9-like
STRINGXP_010257380.11e-112(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-77homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]