PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021212-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Dof
Protein Properties Length: 504aa    MW: 54271.9 Da    PI: 4.9674
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021212-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.2e-39144204262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         ++k+l+cprC s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  WALNUT_00021212-RA 144 PDKILPCPRCTSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 204
                         7899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-30141201IPR003851Zinc finger, Dof-type
PfamPF027011.4E-31146202IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.64148202IPR003851Zinc finger, Dof-type
PROSITE patternPS013610150186IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MLEARDPAIK LFGKTITVPE ITANGSVDST GAPAPYSGPV VEDNIDQDQA CSTDSSLENN  60
SDGDGEEREA KKDTLGEKPT ENNQEDPGPP VSSEALTNPD ATSGISENSK TPSVEKESAT  120
LKNSKPEEEH SESNNSQEKP LKKPDKILPC PRCTSMDTKF CYFNNYNVNQ PRHFCKNCQR  180
YWTAGGTMRN VPVGAGRRKN KNSASHYRHI TVSEALQNAG TDLTNGVHHP SLKSNGTVLT  240
FGSDSPLCES MASVLNLADK TMRNCTQNGF QIPEELRIPV SYGGGENGDD CSNGASVVTS  300
NSKDDPGKTG SQEQVMSNCQ GFPPQIPCFP GAPWPYPWNS AQWNSPMPPP AFCPPGFPMP  360
FYPAGAYWGC AVPGTWSIPW LPQPTSPTPG SGPNSPTLGK HSRDENVLTP SNSGDEEPLK  420
EKNAERCLWI PKTLRIDDPG EAARSSIWAT LGLKNDKADS ISGGGLFKAF RSKTDEKNNI  480
AETSPVLQAN PAALSRSLNF HESS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8532330.0KC853233.1 Juglans regia dof zinc finger protein DOF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814013.10.0PREDICTED: cyclic dof factor 2-like
SwissprotQ93ZL51e-126CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A2I4E3P60.0A0A2I4E3P6_JUGRE; cyclic dof factor 2-like
STRINGEMJ164530.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-108cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]