PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021212-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 504aa MW: 54271.9 Da PI: 4.9674 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.2e-39 | 144 | 204 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s WALNUT_00021212-RA 144 PDKILPCPRCTSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 204 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-30 | 141 | 201 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 146 | 202 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.64 | 148 | 202 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 150 | 186 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MLEARDPAIK LFGKTITVPE ITANGSVDST GAPAPYSGPV VEDNIDQDQA CSTDSSLENN 60 SDGDGEEREA KKDTLGEKPT ENNQEDPGPP VSSEALTNPD ATSGISENSK TPSVEKESAT 120 LKNSKPEEEH SESNNSQEKP LKKPDKILPC PRCTSMDTKF CYFNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KNSASHYRHI TVSEALQNAG TDLTNGVHHP SLKSNGTVLT 240 FGSDSPLCES MASVLNLADK TMRNCTQNGF QIPEELRIPV SYGGGENGDD CSNGASVVTS 300 NSKDDPGKTG SQEQVMSNCQ GFPPQIPCFP GAPWPYPWNS AQWNSPMPPP AFCPPGFPMP 360 FYPAGAYWGC AVPGTWSIPW LPQPTSPTPG SGPNSPTLGK HSRDENVLTP SNSGDEEPLK 420 EKNAERCLWI PKTLRIDDPG EAARSSIWAT LGLKNDKADS ISGGGLFKAF RSKTDEKNNI 480 AETSPVLQAN PAALSRSLNF HESS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC853233 | 0.0 | KC853233.1 Juglans regia dof zinc finger protein DOF5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814013.1 | 0.0 | PREDICTED: cyclic dof factor 2-like | ||||
Swissprot | Q93ZL5 | 1e-126 | CDF2_ARATH; Cyclic dof factor 2 | ||||
TrEMBL | A0A2I4E3P6 | 0.0 | A0A2I4E3P6_JUGRE; cyclic dof factor 2-like | ||||
STRING | EMJ16453 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-108 | cycling DOF factor 2 |
Publications ? help Back to Top | |||
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