PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020972-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 346aa    MW: 37097.3 Da    PI: 10.1487
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020972-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.1e-3597187195
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..k 89 
                         aa+k+ +++++hTkv+gR+RR+R++a caar+F+L++eL +++d++ti WLl+ a+pai+++tgt++ +a +  +++   +      +  +
  WALNUT_00020972-RA  97 AAAKRASTKDRHTKVEGRGRRIRMPAACAARIFQLTRELEHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAL-SVNGTLKI-----PttS 181
                         589**************************************************************99888444.12222222.....1212 PP

                 TCP  90 aaksaa 95 
                         a +s++
  WALNUT_00020972-RA 182 APNSDP 187
                         222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-29103180IPR005333Transcription factor, TCP
PROSITE profilePS5136926.072104158IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAAIREQERE KEQAATRSVG FEINGGEEAE LRNHHRKEGP TNTTISTPPQ PTSAEIAAPK  60
EEPETEAIQV MPVAAHVPAG IQMQMDMKAV GSRTQQAAAK RASTKDRHTK VEGRGRRIRM  120
PAACAARIFQ LTRELEHKSD GETIRWLLEH AEPAIIAATG TGTVPAIALS VNGTLKIPTT  180
SAPNSDPPIK KKRKRPANSE YVDVSDGVSV SSGLAPITTV PQRQVQAVVP VWAIPSNAVV  240
PGTLIMVPPM ASIAGPSNQP HIFTFPATAT PLINVSARPI SSFVSSMANT PANVQIQPNS  300
TTSCPSSATS MTSSKTITST TQMLRDFSLE IYDKQELPLM PRPSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847587.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646472e-79TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2I4GUL80.0A0A2I4GUL8_JUGRE; transcription factor TCP9-like
STRINGevm.model.supercontig_18.1761e-128(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-67TCP family protein