PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020860-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 280aa    MW: 32073.9 Da    PI: 6.6331
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020860-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed +l + v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
  WALNUT_00020860-RA 10 KGPWTEREDFKLNCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                        79********************************************97 PP
2Myb_DNA-binding49.97.6e-1663108148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E+ l ++++ ++G++ W++Ia++++ gRt++++k++w++++
  WALNUT_00020860-RA  63 RGKMTLQEERLVLELHSKWGNR-WSRIAHRLP-GRTDNEIKNYWRTHM 108
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.016557IPR017930Myb domain
SuperFamilySSF466892.96E-287104IPR009057Homeodomain-like
SMARTSM007177.2E-13959IPR001005SANT/Myb domain
PfamPF002491.9E-131057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-181164IPR009057Homeodomain-like
CDDcd001673.30E-91257No hitNo description
PROSITE profilePS5129425.95858112IPR017930Myb domain
SMARTSM007176.3E-1662110IPR001005SANT/Myb domain
PfamPF002497.8E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2265111IPR009057Homeodomain-like
CDDcd001673.82E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKMVQEGIRK GPWTEREDFK LNCFVGLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTLQE ERLVLELHSK WGNRWSRIAH RLPGRTDNEI KNYWRTHMRK QAQEKKRGLS  120
PSSSSSNSCL SSASNPTVNS LPFPKTGEES FYDTGGHDII SVDSLSFPKT GEESFYDTGG  180
PEIIASAEKQ IEEEKAGENV YSMDDIWKDI ALSEEDTIKP AYYSFSEGGS TFSHHALASP  240
SWEYFLDSLW RMDEEVSKMF LPTSDQFFPC YEYGRASLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25101124105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860260.11e-178PREDICTED: transcription factor MYB48-like isoform X1
SwissprotQ9LX823e-92MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2I4HVR81e-177A0A2I4HVR8_JUGRE; transcription factor MYB48-like isoform X1
STRINGVIT_06s0004g04140.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-92myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]