PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020634-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 738aa    MW: 81985.5 Da    PI: 5.0987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020634-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14503549455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  WALNUT_00020634-RA 503 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 549
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-579191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.676499548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-19501568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-19503564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-15503553No hitNo description
PfamPF000109.4E-12503548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-18505554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAAPPSSRLQ TMLQAAVQSV QWTYSLFWQI CPQQGILVWA DGYYNGAIKT RKTVQPMEVS  60
SEEASLQRSQ QLRELYDSLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANDA DSKTFTRAIL AKSARVQTIV CIPMMGGVVE FGTIDKVQED  180
LGFIQHVKSF FTDHQPLPPK PALSEHSTSN PATSSDHPHF HYSPLSIPPI YPAISDQPPI  240
NANLQELGHP EDQDLEDQEE DDDDDDDEED DDGESDSEAE TGRNNRPIIS ASNVLRGVAA  300
TTTSADTTAE PSELVQLEMS EDIRLGSPED GSNNLDSDFH MLAVSQSVNP TNHNKLRQAD  360
SYRADSSTQR WPLGSGIIHP PHSGAPAILD DLAQEDTHYS QTVSTVLQTQ PIFWAANESS  420
SIGYIIPCST HSAFAKWTNR ARTDHQFHAP PDGTSQWLLK YILFSIPVLH SKYSEENSPK  480
LRDGSDATTR FKKGTSQDEL SANHVLAERR RREKLNERFI ILRSLVPFVT KMDKASILGD  540
TIEYLKQLRE KIQDLEARNR QMEVDHQRSR LGDLHRSNSL GDLPKSSALR EQRSGGAMSM  600
DRAGMETDRI RVGQSGQDKR KLRIVEGSSG GVKPKTVVES PPPPPSPTSM ETSIEVSIIE  660
SDALLELQCP YKEGLLLDIM QLLRELRIET TTVQSSLTNG FFVAELRAKV IKENVNGRKA  720
SIVEVKRAIN QIIPHTDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2091919192Transcription factor MYC3
4rqw_B2e-2091919192Transcription factor MYC3
4rs9_A2e-2091919192Transcription factor MYC3
4yz6_A2e-2091919192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1507512ERRRRE
2508513RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814174.10.0PREDICTED: basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2I4E4490.0A0A2I4E449_JUGRE; basic helix-loop-helix protein A-like
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-103bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]