PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020462-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | SRS | ||||||||
Protein Properties | Length: 209aa MW: 23175.2 Da PI: 8.9844 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 171 | 6.3e-53 | 13 | 146 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 +++CqdCGnqakk+C++ RCRtCC+++gf+C+thv+stW+p ++rr+rqqqlaaa + + + +++kr+ ++ +ss+ WALNUT_00020462-RA 13 SSRCQDCGNQAKKECVYLRCRTCCRNKGFQCQTHVRSTWIPLYRRRQRQQQLAAAVLPQHLRVRGHNPKRQS--------QI----TSSG- 90 579**************************************************9977665433333333222........22....2222. PP DUF702 96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +e +++P+ev+ +a f c+r++sv+d +e+++aYqtavsigGh+fkGiLydqG+++ WALNUT_00020462-RA 91 ----SEEANFPAEVHLRAAFFCIRLGSVNDaAEDQYAYQTAVSIGGHLFKGILYDQGPDH 146 ....34567*********************88999***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.2E-51 | 13 | 145 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.1E-25 | 16 | 57 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.4E-22 | 96 | 144 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MLMQGGIGGS FTSSRCQDCG NQAKKECVYL RCRTCCRNKG FQCQTHVRST WIPLYRRRQR 60 QQQLAAAVLP QHLRVRGHNP KRQSQITSSG SEEANFPAEV HLRAAFFCIR LGSVNDAAED 120 QYAYQTAVSI GGHLFKGILY DQGPDHESNC TAGEGSSLAP QPPKLLNAAD LANITTNPAY 180 TETLHPPIFP FPFTTTFMPG TQFLQRPKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840329.1 | 1e-157 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A2I4G8V2 | 1e-155 | A0A2I4G8V2_JUGRE; protein SHI RELATED SEQUENCE 1-like | ||||
STRING | XP_008236969.1 | 2e-66 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-43 | Lateral root primordium (LRP) protein-related |