PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020456-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CAMTA
Protein Properties Length: 487aa    MW: 55251.6 Da    PI: 6.5077
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020456-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-139.88.1e-132783145894
                CG-1  58 kkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                          k kdgkt +E+hekLKvg+v+vl+cyYa +ee+ + 
  WALNUT_00020456-RA 278 LKVKDGKTLKEAHEKLKVGSVNVLHCYYAPGEEVLEN 314
                         488***************************9987654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF038593.2E-7279311IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDITKGEHLI TMHLINKVDN SMRPVSRKCK DVVVRLIRQP PWETHTLKWP SFTVEWVWDQ  60
EELSLFVDLV SLGCKSLQSD SSSPLTSLPL LTSYFVGDEA LLGTLLVLEI ILHNALLPAV  120
VVSLSKLFQI SAAKYLYAIL LAFFLCFSRF FWRGSKQKGL KSKCESALHQ LLKERAKNQV  180
NDLEGVLNNL QSTRKESQAY DIVVLEQQVH QRLREWTSEL NEPSMISSLV TCSFNSKEFA  240
HFLRLCEEED DAITYGSKSN ALNLFDKIRR QGPCFGMLKV KDGKTLKEAH EKLKVGSVNV  300
LHCYYAPGEE VLENSRGFHT PICFGDNSVH LSTWPMNQLS NFELANGLCT ALLEPGTLDM  360
NLRSAPEPFS THPIQKNEQL VEKPMMPVLQ WAHGSFWNCE FNLVCIGPTL PTPRGNIASE  420
ISDFSNTIYA WELPTKLLLS GGERGDSWVG FITVYKAIVQ QDEMHDAYGK LLKEVEERLE  480
KIYKSAY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14983494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-23vascular plant one zinc finger protein