PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020456-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | CAMTA | ||||||||
Protein Properties | Length: 487aa MW: 55251.6 Da PI: 6.5077 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 39.8 | 8.1e-13 | 278 | 314 | 58 | 94 |
CG-1 58 kkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 k kdgkt +E+hekLKvg+v+vl+cyYa +ee+ + WALNUT_00020456-RA 278 LKVKDGKTLKEAHEKLKVGSVNVLHCYYAPGEEVLEN 314 488***************************9987654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03859 | 3.2E-7 | 279 | 311 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MDITKGEHLI TMHLINKVDN SMRPVSRKCK DVVVRLIRQP PWETHTLKWP SFTVEWVWDQ 60 EELSLFVDLV SLGCKSLQSD SSSPLTSLPL LTSYFVGDEA LLGTLLVLEI ILHNALLPAV 120 VVSLSKLFQI SAAKYLYAIL LAFFLCFSRF FWRGSKQKGL KSKCESALHQ LLKERAKNQV 180 NDLEGVLNNL QSTRKESQAY DIVVLEQQVH QRLREWTSEL NEPSMISSLV TCSFNSKEFA 240 HFLRLCEEED DAITYGSKSN ALNLFDKIRR QGPCFGMLKV KDGKTLKEAH EKLKVGSVNV 300 LHCYYAPGEE VLENSRGFHT PICFGDNSVH LSTWPMNQLS NFELANGLCT ALLEPGTLDM 360 NLRSAPEPFS THPIQKNEQL VEKPMMPVLQ WAHGSFWNCE FNLVCIGPTL PTPRGNIASE 420 ISDFSNTIYA WELPTKLLLS GGERGDSWVG FITVYKAIVQ QDEMHDAYGK LLKEVEERLE 480 KIYKSAY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-23 | vascular plant one zinc finger protein |