PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020421-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 263aa    MW: 30362.1 Da    PI: 7.0883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020421-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.8e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l++ +   G ++W+ ++r  g+ R++k+c++rw +yl
  WALNUT_00020421-RA 14 RGPWTIEEDHKLINFILNNGIHCWRMVPRLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding53.17.2e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+ E+  +++++ +lG++ W++Ia++++ gRt++++k++w++
  WALNUT_00020421-RA  67 RGGFTEAEENEIIQLHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                         788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.693961IPR017930Myb domain
SuperFamilySSF466892.4E-2811108IPR009057Homeodomain-like
SMARTSM007175.7E-71363IPR001005SANT/Myb domain
PfamPF002493.9E-111461IPR001005SANT/Myb domain
CDDcd001674.38E-51661No hitNo description
PROSITE profilePS5129426.16862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2665116IPR009057Homeodomain-like
SMARTSM007176.4E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567110IPR001005SANT/Myb domain
CDDcd001674.26E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLINFIL NNGIHCWRMV PRLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEAEENEIIQ LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKLLG  120
LDPVTHKPIE KKGNSGDKNE TALESNSPKG REDSMEVNFM DNYNYSKKDS LGTEEKRDKV  180
ELNLEETNDL LNNYDICWGS LDFGSWMNQE TNTNTTYSPS FSLENSSNPS VGESSSLQEW  240
VGRVDSLLSW DGFSYLEQNI FFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814315.10.0PREDICTED: myb-related protein 315
SwissprotP813942e-81MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2I4E4J20.0A0A2I4E4J2_JUGRE; myb-related protein 315
STRINGPOPTR_0001s36220.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-86myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]